New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5773906 =	50 (1.110)	3 (0.070)	3/232	NT	6.8%	coding (413/657 nt)	betI	choline‑responsive transcriptional repressor BetI
	?	NC_002947	5773970 =	36 (0.850)					coding (477/657 nt)	betI	choline‑responsive transcriptional repressor BetI

CCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAAT  >  NC_002947/5773825‑5774114                                                                                                                                                  |                                                                                                                                                 ccTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGa                                                                                                                                              >  2:1055791/1‑150 (MQ=255)  cTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCAGCGGCCTGGAAGCCCTGaa                                                                                                                                             >  2:185702/1‑149 (MQ=255)               aGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTgg                                                                                                                                <  1:793760/150‑1 (MQ=255)                      aCCAGCCCGATTTGTACAGGTTGCAGCGGATCAACGACAACCGCTTGTATTCCAACCTGTGCTGTCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTg                                                                                                                         >  2:839568/1‑150 (MQ=255)                       ccAGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTgg                                                                                                                        >  2:1069626/1‑150 (MQ=255)                        cAGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGgc                                                                                                                       >  1:155574/1‑150 (MQ=255)                         aGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGgcg                                                                                                                      >  1:178799/1‑150 (MQ=255)                                 ttGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCg                                                                                                              <  1:957145/150‑1 (MQ=255)                                   gCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCggg                                                                                                            <  1:16148/150‑1 (MQ=255)                                   gCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCggg                                                                                                            >  2:16148/1‑150 (MQ=255)                                   gCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCACCGCGCCCTTCCTCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCggg                                                                                                            <  1:445098/150‑1 (MQ=255)                                     acaGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTGTATCGGGCGCGCAAGGAAGCCCGCGGCATCGGAGGCGTTATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTg                                                                                                          >  1:270494/1‑150 (MQ=255)                                     acaGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGcc                                                                                                                    <  2:358064/140‑1 (MQ=255)                                     acaGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGcc                                                                                                                    >  1:358064/1‑140 (MQ=255)                                       aGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGAt                                                                                                        <  1:1055791/150‑1 (MQ=255)                                       aGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGAt                                                                                                        >  2:1052777/1‑150 (MQ=255)                                          acccgacagggcgccacgcagccacaaaccgtcgatcaggGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACg                                                                                                                                        <  2:656524‑M1/75‑1 (MQ=255)                                          acccgacagggcgccacgcagccacaaaccgtcgatcaggGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACg                                                                                                                                        >  1:656524‑M1/41‑115 (MQ=255)                                               gCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCt                                                                                                                                                >  2:805457/1‑102 (MQ=255)                                               gCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCt                                                                                                                                                <  1:805457/102‑1 (MQ=255)                                               gCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGa                                                                                                <  2:178799/150‑1 (MQ=255)                                                  gATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGCGCTGCATGCGacac                                                                                             >  2:936882/1‑150 (MQ=255)                                                  gATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCATGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGacac                                                                                             <  1:11624/150‑1 (MQ=255)                                                              ccGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGa                                                                                                         <  2:417224/126‑1 (MQ=255)                                                              ccGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGa                                                                                                         >  1:417224/1‑126 (MQ=255)                                                               cGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTc                                                                                                               >  2:1098130/1‑119 (MQ=255)                                                               cGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTc                                                                                                               <  1:1098130/119‑1 (MQ=255)                                                                  ttGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACgg                                                                             >  2:162516/1‑150 (MQ=255)                                                                    gTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGAt                                                                           >  2:1010444/1‑150 (MQ=255)                                                                       ttCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGc                                                                        >  1:539320/1‑150 (MQ=255)                                                                       ttCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGc                                                                        >  1:45216/1‑150 (MQ=255)                                                                       ttCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGc                                                                        <  1:1069626/150‑1 (MQ=255)                                                                       cgtcgatcagggctgccaggccgcgggctgccttgcgcgcatggtagagcggcagggcgcggcggaactggcagcCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGt                                                                                                           <  2:656524‑M2/40‑1 (MQ=255)                                                                       cgtcgatcagggctgccaggccgcgggctgccttgcgcgcatggtagagcggcagggcgcggcggaactggcagcCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGt                                                                                                           >  1:656524‑M2/76‑115 (MQ=255)                                                                                gtgCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTtgt                                                                                                                                  >  1:1146450/1‑83 (MQ=255)                                                                                gtgCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTtgt                                                                                                                                  <  2:1146450/83‑1 (MQ=255)                                                                                  GCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCGAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACa                                                             >  1:1163122‑M1/1‑150 (MQ=255)                                                                                   ctgccaggccgcgggctgccttgcgcgcatggtagagcggcagggcgcggcggaactggcagcCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACAt                                                            >  1:708692‑M2/64‑150 (MQ=255)                                                                                   CTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGAGCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACAt                                                            >  2:460309‑M1/1‑150 (MQ=255)                                                                                    TGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACAcc                                                                                            <  2:637331‑M1/117‑1 (MQ=255)                                                                                    TGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACAcc                                                                                            >  1:637331‑M1/1‑117 (MQ=255)                                                                                      CCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGa                                                         <  1:232937‑M1/150‑1 (MQ=255)                                                                                       CAGTTCCGCCGCGCCCTGCCGCCCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGaa                                                        >  2:103766‑M1/1‑150 (MQ=255)                                                                                                 gcgcCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGa                                                                                                                                              >  1:342150/1‑54 (MQ=255)                                                                                                 gcgcCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGa                                                                                                                                              <  2:342150/54‑1 (MQ=255)                                                                                                     ccTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCaa                                          >  2:993811/1‑150 (MQ=255)                                                                                                       tgacgatctACAATGAGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAagc                                        >  2:443899/7‑150 (MQ=255)                                                                                                           gCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCGTTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAgcagca                                    >  1:764740/1‑150 (MQ=255)                                                                                                              ctACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATCCATTCGACACTCACCTCTGGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCacac                                 <  1:1052777/150‑1 (MQ=255)                                                                                                               tACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACAcc                                >  1:751925/1‑150 (MQ=255)                                                                                                                 ccATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCt                              <  1:839568/150‑1 (MQ=255)                                                                                                                     gcgcgcAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTa                                                                     <  2:747722/107‑1 (MQ=255)                                                                                                                     gcgcgcAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTa                                                                     >  1:747722/1‑107 (MQ=255)                                                                                                                                       ggCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGgctgct        <  1:443899/150‑1 (MQ=255)                                                                                                                                         ccTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTCTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGa      <  1:185702/150‑1 (MQ=255)                                                                                                                                             gCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACCACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAAT  <  2:45216‑M1/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                 CCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCGCGCCCTGCCGCTCTACCATGCGCGCAAGGCAGCCCGCGGCCTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAAT  >  NC_002947/5773825‑5774114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.