New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6052514	37 (0.820)	4 (0.090)	4/234	NT	7.8%	intergenic (+19/+151)	PP_5304/PP_5305	lipoprotein/epimerase/dehydratase‑like protein
	?	NC_002947	= 6052593	59 (1.390)					intergenic (+98/+72)	PP_5304/PP_5305	lipoprotein/epimerase/dehydratase‑like protein

CAGCGTGGTGCACCGTTCATCATCAAGCGCGATGGTGACAAGCTGGAGATTTTCCAGGCAGTGAACCGTGCACAGCCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6052361‑6052514 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccctgtGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAACCCGATCCTACAGGGACCGCGCATCATCTCAGCTGCGCTCCAGCGTCCACTGACGCTTGCCCGCTGCCAGCTCTG  <  NC_002947/6052593‑6052449                                                                                                                                                                                                                                                                                                             CAGCGTGGTGCACCGTTCATCATCAAGCGCGATGGTGACAAGCTGGAGATTTTCCAGGCAGTGAACCGTGCACAGCCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCC                                                                                                                                                       >  1:1085398/1‑150                          AGCGCGATGGTGACAAGCTGGAGATTTTCCAGGCAGTGAACCGTGCACAGCCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTG                                                                                                                                                    <  1:112613/128‑1                          AGCGCGATGGTGACAAGCTGGAGATTTTCCAGGCAGTGAACCGTGCACAGCCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTG                                                                                                                                                    >  2:112613/1‑128                                                                            CCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAAC                                                                            <  2:967268/150‑1                                                                                                          acGCGTCAGTCGGCGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAACCCGATCCTACAGGGACCGCGCATCATCTCA                                              <  2:141684/148‑1                                                                                                                     GACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAACCCGATCCTAC                                                                  >  1:495476/1‑119                                                                                                                     GACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAACCCGATCCTAC                                                                  <  2:495476/119‑1                                                                                                                                                      CCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAACCCGATCCTACAGGGACCGCGCATCATCTCAGCTGCGCTCCAGCGTCCACTGACGCTTGCCCGCTGCCAGCTCTG  <  1:46811/150‑1                                                                                                                                                      CCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAACCCGATCCTACAGGGACCGCGCATCATCTCAGCTGCGCTCCAGCGTCCACTGACGCTTGCCCGCTGCCAGCTCTG  <  2:579006/150‑1                                                                                                                                                                                                                                                                                                             CAGCGTGGTGCACCGTTCATCATCAAGCGCGATGGTGACAAGCTGGAGATTTTCCAGGCAGTGAACCGTGCACAGCCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6052361‑6052514 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccctgtGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAACCCGATCCTACAGGGACCGCGCATCATCTCAGCTGCGCTCCAGCGTCCACTGACGCTTGCCCGCTGCCAGCTCTG  <  NC_002947/6052593‑6052449

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.