New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6052514	37 (0.820)	4 (0.090)	4/234	NT	7.8%	intergenic (+19/+151)	PP_5304/PP_5305	lipoprotein/epimerase/dehydratase‑like protein
	?	NC_002947	= 6052593	59 (1.390)					intergenic (+98/+72)	PP_5304/PP_5305	lipoprotein/epimerase/dehydratase‑like protein

CACCGTTCATCATCAAGCGCGATGGTGACAAGCTGGAGATTTTCCAGGCAGTGAACCGTGCACAGCCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTAAGCAAGACAATAGCTCCCACAAGGCATCGCGCCAGTTGCC  >  NC_002947/6052371‑6052662                                                                                                                                                |                                                                                                                                                     cagcGTTCAACATCAAGAGCGGTGGTGACAAGCTGGAGATTTTCCAGGCAGTGAACCGTGCACAGCCGGATGAAAGGCCAGAGCTGGCAGCCGGCAAGAGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGTATc                                                                                                                                                <  1:303019/147‑1 (MQ=255)      ttCATCATCAAGCGCGATGGTGACAAGCTGGAGATTTTCCAGGCAGTGAACCGTGCACAGCCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGtt                                                                                                                                           >  1:708454/1‑150 (MQ=255)         atcatcaAGCGCGATGGTGACAAGCTGGAGATTTTCCAGGCAGTGAACCGTGCACAGCCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTaa                                                                                                                                        >  2:254744/1‑149 (MQ=255)                  cgcgATGGTGACAAGCTGGAGATTTTCCAGGCAGTGAACCGTGCACAGCCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTa                                                                                                                                                     >  1:355301/1‑128 (MQ=255)                  cgcgATGGTGACAAGCTGGAGATTTTCCAGGCAGTGAACCGTGCACAGCCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTa                                                                                                                                                     <  2:355301/128‑1 (MQ=255)                      aTGGTGACAAGCTGGAGATTTTCCAGGCCGTGCACCGTGACCCGCCGGATGAGATGCCAAGGCAGGCAAAAGACAAGAAGCGGGGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGac                                                                                                                           >  2:1042460/1‑150 (MQ=255)                            aCAAGCTGGAGATTTTCCAGGCAGTGAACCGTGCACAGCCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCGGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACcgcg                                                                                                                     >  1:206045/1‑150 (MQ=255)                              aaGCTGGAGATTTTCCAGGCAGTGAACCGTGCACAGCCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGt                                                                                                                   <  1:213006/150‑1 (MQ=255)                                 cTGGAGATTTTCCAGGCAGTGAACCGTGCACAGCCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGCAGCCACCGCGGTgca                                                                                                                <  2:113300/150‑3 (MQ=255)                                  tGGAGATTTTCCAGGCAGTGAACCGTGCACAGCCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGAt                                                                                                               <  2:1085398/150‑1 (MQ=255)                                  tGGAGATTTTCCAGGCAGTGAACCGTGCACAGCCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGAt                                                                                                               >  2:115423/1‑150 (MQ=255)                                   ggAGATTTTCCAGGCAGTGAACCGTGCACAGCCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATg                                                                                                              <  1:597963/150‑1 (MQ=255)                                   ggAGATTTTCCAGGCAGTGAACCGTGCACAGCCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATg                                                                                                              >  2:582026/1‑150 (MQ=255)                                              aGGCAGTGAACCGTGCACAGCCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACg                                                                                                         <  1:1139683/144‑1 (MQ=255)                                              aGGCAGTGAACCGTGCACAGCCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACg                                                                                                         >  2:1139683/1‑144 (MQ=255)                                                gCAGTGAACCGTGCACAGCCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGc                                                                                                 <  2:57413/150‑1 (MQ=255)                                                        ccGTGCACAGCCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCGAAGCCCgtgcca                                                                                         <  1:652645/150‑4 (MQ=255)                                                             cacaGCCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCggg                                                                                    >  1:383611/1‑150 (MQ=255)                                                                 gCCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGGCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCGAAGCCCgtgccatcca                                                                                     >  1:387000/1‑138 (MQ=37)                                                                  ccGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTgggagcgggcttgcccgcgaacacgggcgaagcccgtgccatccaccgcggtgtcttcttcgcgggtaaac                                                                               <  2:967268‑M1/150‑72 (MQ=255)                                                                    ggATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGccc                                                                             >  2:1177941/1‑150 (MQ=255)                                                                    ggATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGGGACCTGCACGGGCTTCGCCCGTGTTCGCGGGCAAGccc                                                                             <  1:1189098/150‑1 (MQ=37)                                                                     gATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCg                                                                            >  1:997216/1‑150 (MQ=255)                                                                          aaTGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTccc                                                                       >  1:1098300/1‑150 (MQ=255)                                                                               cAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCacagg                                                                  <  2:579006‑M2/150‑6 (MQ=255)                                                                               cAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCacagg                                                                  <  1:46811‑M2/150‑6 (MQ=255)                                                                                          gCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGGATCGCGCCAg                                                       >  1:914949/1‑150 (MQ=255)                                                                                           cGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCcg                                                                                                                                     >  2:512788/1‑71 (MQ=255)                                                                                           cGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCcg                                                                                                                                     <  1:512788/71‑1 (MQ=255)                                                                                              gCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAACCCGCTCCCACAGGGATCGCTCCAGCttt                                                   >  2:560889/1‑150 (MQ=255)                                                                                              gCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCACGAAGAAGACAcc                                                                                                                        >  1:1046678/1‑81 (MQ=255)                                                                                              gCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCACGAAGAAGACAcc                                                                                                                        <  2:1046678/81‑1 (MQ=255)                                                                                               cAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGGATCGCGCCAGCtttt                                                  <  2:708454/150‑1 (MQ=255)                                                                                                acgcgTCAGTCGGCGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTgggagcgggcttgcccgcgaacacgggcgaagcccgtgccatccaccgcggtgtcttcttcgcgggtaaacccgatcctacagggaccgcgcatcatctca                                                 <  2:141684‑M1/148‑102 (MQ=255)                                                                                                     tCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAAt                                            >  2:40216/1‑150 (MQ=255)                                                                                                        gTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATc                                                                                                                                                <  1:748774/47‑1 (MQ=255)                                                                                                        gTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATc                                                                                                                                                >  2:748774/1‑47 (MQ=255)                                                                                                         tGGACGCTGGAGCGCAGCTGAGATGATGCGCGGCCCGTGTAGGATCGGGTTTACCCTTGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTAAg                                        <  1:919506/150‑1 (MQ=255)                                                                                                           gACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTgggagcgggcttgcccgcgaacacgggcgaagcccgtgccatccaccgcggtgtcttcttcgcgggtaaacccgatcctac                                                                     >  1:495476‑M1/1‑38 (MQ=255)                                                                                                           gACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTgggagcgggcttgcccgcgaacacgggcgaagcccgtgccatccaccgcggtgtcttcttcgcgggtaaacccgatcctac                                                                     <  2:495476‑M1/119‑82 (MQ=255)                                                                                                                      gcAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGCTGGCACGGGCTTCGCCCGTGTTCGGGGGCAAGCCCGCTCCCACAAAGAACGCGCCAGCTTTTAGAAATTAAGCAAGACAATAGCt                           >  1:62963/1‑150 (MQ=18)                                                                                                                        aGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTAAGCAAGACAATAGCTcc                         >  2:799631/1‑150 (MQ=255)                                                                                                                           tGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCacagggaccgcgcatcatctcagctgcgctccagcgccgactgacgcgt                      <  2:141684‑M2/150‑50 (MQ=255)                                                                                                                           tGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTAAGCAAGACAATAGCTCCcac                      <  2:383611/150‑1 (MQ=255)                                                                                                                             agaTGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTAAGCAAGACAATAGCTCCCACaa                    <  1:115423/150‑1 (MQ=255)                                                                                                                                 gatgCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTAAGCAAGACAATAGCTCCCACAAGGCa                <  1:579006/150‑1 (MQ=255)                                                                                                                                            ccTGTgggagcgggcttgcccgcgaacacgggcgaagcccgtgccatccaccgcggtgtcttcttcgcgggtaaacccgatcctacagggaccgcgcatcatctcagctgcgctccagcgtccactgacgcttgcccgctgccagctctg     <  2:579006‑M1/150‑146 (MQ=255)                                                                                                                                            ccTGTgggagcgggcttgcccgcgaacacgggcgaagcccgtgccatccaccgcggtgtcttcttcgcgggtaaacccgatcctacagggaccgcgcatcatctcagctgcgctccagcgtccactgacgcttgcccgctgccagctctg     <  1:46811‑M1/150‑146 (MQ=255)                                                                                                                                             cTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCgt                                                                                             <  1:716309/61‑1 (MQ=37)                                                                                                                                             cTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCgt                                                                                             >  2:716309/1‑61 (MQ=37)                                                                                                                                              tGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTAAGCAAGACAATAGCTCCCACAAGGCATCGCGCCAGTTGc   >  1:137139/1‑150 (MQ=255)                                                                                                                                               gTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTcc                                                                        >  2:984394/1‑80 (MQ=34)                                                                                                                                               gTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCacagggaccgcgcatcatctcagctgcgctccagcgtc                                 <  2:495476‑M2/119‑39 (MQ=255)                                                                                                                                               gTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCacagggaccgcgcatcatctcagctgcgctccagcgtc                                 >  1:495476‑M2/1‑81 (MQ=255)                                                                                                                                               gTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTAAGCAAGACAATAGCTCCCACAAGGCATCGCGCCAGTCGcc  >  1:1153365/1‑150 (MQ=255)                                                                                                                                                tAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGGATCgcgc                                                          <  1:1135870/93‑1 (MQ=33)                                                                                                                                                tAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGGATCgcgc                                                          >  2:1135870/1‑93 (MQ=33)                                                                                                                                                |                                                                                                                                                     CACCGTTCATCATCAAGCGCGATGGTGACAAGCTGGAGATTTTCCAGGCAGTGAACCGTGCACAGCCGGATGAAATGCCAGAGCTGGCAGCGGGCAAGCGTCAGTGGACGCTGGAGCGCAGCTGAGATGATGCGCGGTCCCTGTAGGATCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTAAGCAAGACAATAGCTCCCACAAGGCATCGCGCCAGTTGCC  >  NC_002947/6052371‑6052662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.