New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6112622 =	54 (1.200)	4 (0.090)	3/238	NT	7.5%	coding (179/528 nt)	PP_5363	hypothetical protein
	?	NC_002947	6112656 =	47 (1.090)					coding (145/528 nt)	PP_5363	hypothetical protein

ATTCATGCTCGGCCAGTTGAAGAACCTGCCGCCAGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6112660‑6112622 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcaTGAATTCCATGTCGGGTAGCGGCTTGCCATCGACCTGCATGTTGCTGGTGGTCAGCTCCCACAACCCCGGTTGCAGCATCTGGGCTTGTACCAGTGGACTGCTCATGCCTAGGGCCAACGCCAACAGTGGCAGACGAATCTTCATGGAC  >  NC_002947/6112656‑6112804                                                                                                                                                                                              ATTCATGCTCGGCCAGTTGAAGAACCTGCCGCCAGAGCATGAATTCCATGTCGGGTAGCGGCTTGCCATCGACCTGCATGTTGCTGGTGGTCAGCTCCCACAACCCCGGTTGCAGCATCTGGGCTTGTACCAGTGGACTGCTCATGCCTA                                        >  2:55052/1‑150 ATTCATGCTCGGCCAGTTGAAGAACCTGCCGCCAGAGCATGAATTCCATGTCGGGTAGCGGCTTGCCATCGACCTGCATGTTGCTG                                                                                                        <  1:959431/86‑1 ATTCATGCTCGGCCAGTTGAAGAACCTGCCGCCAGAGCATGAATTCCATGTCGGGTAGCGGCTTGCCATCGACCTGCATGTTGCTG                                                                                                        >  2:959431/1‑86   TCATGCTCGGCCAGTTGAAGAACCTGCCGCCAGAGCATGAATTCCATGTCGGGTAGCGGCTTGCCATCGACCTGCATGTTGCTGGTGGTCAGCTCCCACAACCCCGGTTGCAGCATCTGGGCTTGTACCAGTGGACTGCTCATGCCTAGG                                      <  1:55052/150‑1                                      CATGAATTCCATGTCGGGTAGCGGCTTGCCATCGACCTGCATGTTGCTGGTGGTCAGCTCCCACAACCCCGGTTGCAGCATCTGGGCTTGTACCAGTGGACTGCTCATGCCTAGGGCCAACGCCAACAGTGGCAGACGAATCTTCATGGA   >  2:950906/1‑150                                       ATGAATTCCATGTCGGGTAGCGGCTTGCCATCGACCTGCATGTTGCTGGTGGTCAGCTCCCACAACCCCGGTTGCAGCATCTGGGCTTGTACCAGTGGACTGCTCATGCCTAGGGCCAACGCCAACAGTGGCAGACGAATCTTCATGGAC  <  2:703536/150‑1                                       ATGAATTACATGTAGGGTAGCTGCTTTCCATCGACCTGCATGTTGCTGGTGGTCAGCTCCCACAACCCCGGTTGCAGCATCTGGGCTTGTACCAGTGGACTGCTCATGCCTAGGGCCAACGCCAACAGTGGCAGACGAATCTTCATGGAC  >  2:379961/1‑150                                                                                                                                                                                              ATTCATGCTCGGCCAGTTGAAGAACCTGCCGCCAGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6112660‑6112622 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcaTGAATTCCATGTCGGGTAGCGGCTTGCCATCGACCTGCATGTTGCTGGTGGTCAGCTCCCACAACCCCGGTTGCAGCATCTGGGCTTGTACCAGTGGACTGCTCATGCCTAGGGCCAACGCCAACAGTGGCAGACGAATCTTCATGGAC  >  NC_002947/6112656‑6112804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.