New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	189530 =	40 (0.890)	4 (0.090)	4/238	NT	9.5%	coding (1639/1947 nt)	PP_0165	GGDEF domain‑containing protein
	?	NC_002947	189561 =	38 (0.880)					coding (1670/1947 nt)	PP_0165	GGDEF domain‑containing protein

ACCTGTCCGCCGCCACCCTGGCCGACCCCAAGGCCCTTCAGCGCGTTTTCGAGCTGCTGGGCCAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAGCATGATTGGCAACCTGGCGCATTTGGGCCTGGCGTACCTGAAGATTGACGGCAGTTACATCCGCAACATCGATCATGAG  >  NC_002947/189387‑189670                                                                                                                                                |                                                                                                                                             aCCTGTCCGCCGCCACCCTGGCCGACCCCAAGGCCCTTCAGCGCGTTTTCGAGCTGCTGGGCCAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGgc                                                                                                                                        >  2:700869/1‑150 (MQ=255)  ccTGTCCGCCGCCACCCTGGCCGACCCCAAGGCCCTTCAGCGCGTTTTCGAGCTGCTGGGCCAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGgcg                                                                                                                                       >  1:474222/1‑150 (MQ=255)   cTGTCCGCCGCCACCCTGGCCGACCCCAAGGCCCTTCAGCGCGTTTTCGAGCTGCTGGGCCAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGgcgc                                                                                                                                      >  2:541004/1‑150 (MQ=255)    tGTCCGCCGCCACCCTGGCCGACCCCAAGGCCCTTCAGCGCGTTTTCGAGCTGCTGGGCCAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGcc                                                                                                                                     >  1:523973/1‑150 (MQ=255)              atgaacagccgcttgtgctgctcatgatcgatgttgcggatgtaactgccgtcaatcttcaggtacgccaggcccaaatgcgccaggttgccaatcatgctgaagcgcccaccgaagcgttgcaaagccaACCCGGCGCCTGCATGggct                                                                                                                           <  1:12595‑M1/20‑1 (MQ=255)                 ccTGGCCGACCCCAAGGCCCTTCAGCGCGTTTTCGAGCTGCTGGGCCAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGggcttgg                                                                                                                        >  2:186844/1‑150 (MQ=255)                      ccGACCCCAAGGCCCTTCAGCGCGTTTTCGAGCTGCTGGGCCAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCg                                                                                                                   <  2:172679/150‑1 (MQ=255)                          ccccAAGGCCCTTCAGCGCGTTTTCGAGCTGCTGGGCCAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGtt                                                                                                               <  2:1021806/150‑1 (MQ=255)                           cccAAGGCCCTTCAGCGCGTTTTCGAGCTGCTGGGCCAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTg                                                                                                              >  1:977333/1‑150 (MQ=255)                              gctgctcatgatcgatgttgcggatgtaactgccgtcaatcttcaggtacgccaggcccaaatgcgccaggttgccaatcatgctgaagcgcccaccgaagcgttgcaaagccaACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCt                                                                                                           >  2:12595‑M1/115‑150 (MQ=255)                                 gCCCTTCAGCGCGTTTTCGAGCTGCTGGGCCAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCAcc                                                                                                                                            <  1:857506/114‑1 (MQ=255)                                 gCCCTTCAGCGCGTTTTCGAGCTGCTGGGCCAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCAcc                                                                                                                                            >  2:857506/1‑114 (MQ=255)                                 gCCCTTCAGCGCGTTTTCGAGCTGCTGGGCCAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTg                                                                                                        <  1:151256/150‑1 (MQ=255)                                        aGCGCGTTTTCGAGCTGCTGGGCCAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCt                                                                                                 <  1:427136/150‑1 (MQ=255)                                         gcgcGTTTTCGAGCTGCTGGGCCAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCtt                                                                                                <  2:523973/150‑1 (MQ=255)                                         gcgcGTTTTCGAGCTGCTGGGCCAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCtt                                                                                                >  2:899456/1‑150 (MQ=255)                                          cgcgTTTTCGAGCTGCTGGGCCAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCgg                                                                                                                  <  2:746946/131‑1 (MQ=255)                                          cgcgTTTTCGAGCTGCTGGGCCAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCgg                                                                                                                  >  1:746946/1‑131 (MQ=255)                                          cgcgTTTTCGAGCTGCTGGGCCAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTc                                                                                               >  2:531775/1‑150 (MQ=255)                                            cgTTTTCGAGCTGCTGGGCCAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCgg                                                                                             <  2:968062/150‑1 (MQ=255)                                             gTTTTCGAGCTGCTGGGCCAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGt                                                                                            <  2:1009967/150‑1 (MQ=255)                                                   gAGCTGCTGGGCCAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTGGgcgc                                                                                      >  1:741829/1‑150 (MQ=255)                                                            ggCCAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAGCATg                                                                             >  2:52437/1‑150 (MQ=255)                                                              ccAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAGCATGAt                                                                           >  2:594753/1‑150 (MQ=255)                                                              ccAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAGCATGAt                                                                           >  2:875364/1‑150 (MQ=255)                                                               cAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCTACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAGCATGAtt                                                                          <  1:571513/150‑1 (MQ=255)                                                                   aatcttcaggtacgccaggcccaaatgcgccaggttgccaatcatgctgaagcgcccaccgaagcgttgcaaagccaACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTg                                                                                                              <  1:731726‑M1/33‑1 (MQ=255)                                                                   aatcttcaggtacgccaggcccaaatgcgccaggttgccaatcatgctgaagcgcccaccgaagcgttgcaaagccaACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTg                                                                                                              >  2:731726‑M1/78‑110 (MQ=255)                                                                       ggcgCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAGCATGATTGGCAACCt                                                                  >  1:1199/1‑150 (MQ=255)                                                                          gcTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAGCATGATTGGCAACCTGgc                                                               <  2:474222/150‑1 (MQ=255)                                                                                tCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAGCATGATTGGCAACCTGGCGCAttt                                                         <  1:700869/150‑1 (MQ=255)                                                                                    cgGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAGCATGATTGGCAACCTGGCGCATTTGGGc                                                     <  1:594753/150‑1 (MQ=255)                                                                                      gCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAGCATGATTGGCAACCTGGCGCATTTGGGCCt                                                   <  1:647374/150‑1 (MQ=255)                                                                                             tttGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAGCATGATTGGCAACCTGGCGCATTTGGGCCTGGCGTAc                                            <  2:741829/150‑1 (MQ=255)                                                                                                  aaTTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAGCATGATTGGCAACCTGGCGCATTTGGGCCTGGCGTACCTGaa                                       <  1:405634/150‑1 (MQ=255)                                                                                                    ttGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAGCATGATTGGCAACCTGGCGCATTTGGGCCTGGCGTACCTGAAGa                                     >  2:1078612/1‑150 (MQ=255)                                                                                                    ttGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAGCATGATTGGCAACCTGGCGCATTTGGGCCTGGCGTACCTGAAGa                                     <  1:531775/150‑1 (MQ=255)                                                                                                              gCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAGCATGATTGGCAACCTGGCGCATTTGGGCCTGGCGTACCTGAAGATTGACGGCAg                           <  2:1199/150‑1 (MQ=255)                                                                                                              gCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAGCATGATTGGCAACCTGGCGCATTTGGGCCTGGCGTACCTGAAGATTGACGGCAg                           <  1:1078612/150‑1 (MQ=255)                                                                                                                aGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTGGGCTCTTCAGCATGATTGGCAACCTGGCGCATTTGGGCCTGGCGTACCTGAAGATTGACGGCAGtt                         >  2:982026/1‑150 (MQ=255)                                                                                                                 gTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTgg                                                                                          <  2:46009/84‑1 (MQ=255)                                                                                                                 gTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTgg                                                                                          >  1:46009/1‑84 (MQ=255)                                                                                                                                agCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAGCATGATTGGCAAc                                                                    >  1:757892/1‑91 (MQ=255)                                                                                                                                agCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAGCATGATTGGCAAc                                                                    <  2:757892/91‑1 (MQ=255)                                                                                                                                      ggAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAGCATGATTGGCAACCTGGCGCATTTGGGCCTGGCGTACCTGAAGATTGACGGCAGTTACATCCGCAACATCGATCATGa   <  1:186844/150‑1 (MQ=255)                                                                                                                                       gAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAGCATGATTGGCAACCTGGCGCATTTGGGCCTGGCGTACCTGAAGATTGACGGCAGTTACATCCGCAACATCGATCATGag  >  1:967380/1‑150 (MQ=255)                                                                                                                                                |                                                                                                                                             ACCTGTCCGCCGCCACCCTGGCCGACCCCAAGGCCCTTCAGCGCGTTTTCGAGCTGCTGGGCCAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCGAGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAGCATGATTGGCAACCTGGCGCATTTGGGCCTGGCGTACCTGAAGATTGACGGCAGTTACATCCGCAACATCGATCATGAG  >  NC_002947/189387‑189670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.