New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	205042 =	13 (0.290)	10 (0.230)	4/240	NT	44.3%	coding (10548/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	208443 =	NA (NA)					coding (13949/26049 nt)	PP_0168	putative surface adhesion protein

CTGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGACGGCTTGCCGATCAATAACCACAGTGC‑ATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGA  >  NC_002947/204893‑205191                                                                                                                                                      |                                                                                                                                                       gtcggtgaccgacgtgctgaccggggttttgtcgagtgtcagttgctcgaacttaccgacgtccgcacctccaacggttgcgatcgacatcacgacagggtcgttggtgccgacgtagacgttgtccggggcagtgacggtagcagtgcc                                                                                                                                                        <  2:1044559‑M1/1‑1 (MQ=255) cTGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACACTGACCAACAAAGACGGCTTGCCGATCAATAAc                                                                                                                                                        >  1:428266/1‑150 (MQ=255)   ggAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGACGGCTTGCCGATCAATAACca                                                                                                                                                      >  2:1134155/1‑150 (MQ=255)       cTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGACGGCTTGCCGATCAATAACCACAGt                                                                                                                                                  <  2:1020893/150‑1 (MQ=255)           gCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGACGGCTTGCCGATCAATAACCACAGTGC‑At                                                                                                                                             <  2:278137/150‑1 (MQ=255)               tGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGACGGCTTGCCGATCAATAACCACAGTGC‑ATTGAc                                                                                                                                         >  2:591013/1‑150 (MQ=255)                   gCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGACGGCTTGCCGATCAATAACCACAGTGC‑ATTGACCTTc                                                                                                                                     <  1:424454/150‑1 (MQ=255)                     ttCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGACGGCTTGCCGATCAATAACCACAGTGC‑ATTGACCTTCAc                                                                                                                                   >  1:518164/1‑150 (MQ=255)                          ttCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGACGGCTTGCCGATCAATAACCACAGTGC‑ATTGACCTTCACGCTGa                                                                                                                              <  2:811430/150‑1 (MQ=39)                          ttCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGACGGCTTGCCGATCAATAACCACAGTGC‑ATTGACCTTCACGCTGa                                                                                                                              <  2:1009327/150‑1 (MQ=38)                          ttCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGACGGCTTGCCGATCAATAACCACAGTGC‑ATTGACCTTCACGCTGa                                                                                                                              <  1:647595/150‑1 (MQ=39)                            cAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGACGGCTTGCCGATCAATAACCACAGTGC‑ATTGACCTTCACGCTGAGc                                                                                                                            <  2:245235/150‑1 (MQ=37)                               gTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAACGACGGCTTGCCGATCAATAACCACAGTGC‑ATTGACCTTCACGCTGAGCGAc                                                                                                                         <  2:524886/150‑1 (MQ=21)                               gTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGACGGCTTGCCGATCAATAACCACAGTGC‑ATTGACCTTCACGCTGAGCGAc                                                                                                                         <  1:606595/150‑1 (MQ=34)                               gTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGACGGCTTGCCGATCAATAACCACAGTGC‑ATTGACCTTCACGCTGAGCGAc                                                                                                                         >  2:606595/1‑150 (MQ=35)                                 gACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGACGGCTTGCCGATCAATAACCACAGTGC‑ATTGACCTTCACGCTGAGCGACgg                                                                                                                       <  1:489292/150‑1 (MQ=32)                                          gttgctcgaacttgccgacgtccgcacctccaacggttgcgatcgacatcacgacagggtcgttggtgccgacgtagacgttgtccggggcagtcacggtagcactacCCACAGTGC‑ATTGACCGTCACGCGGAGCGACGGCAAAACCGt                                                                                                              <  2:735412‑M1/42‑1 (MQ=255)                                                                     ctccaacggttgcgatcgacatcacgacagggtcgttggtgccgacgtagacgttacccggggcagtgacggtagcagtgcCCACGGTGCCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCg                                                                                    >  1:198429‑M1/82‑150 (MQ=255)                                                                       tcaacggttgcgatcgatttgatcacagggtcgttggtaccgacgtagacgttgtccggggcagtcacggttgcagtgaCCACAGTGC‑ATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTgg                                                                                 >  2:290686‑M1/80‑150 (MQ=255)                                                                           cggttgcgatcgacatcacgacagggtcgttggtgccgacgtagacgttgtccggggcagtcacggtagcagtacCCACAGTGC‑ATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGTACcgtgggtac                                                                             >  1:735412‑M1/76‑147 (MQ=255)                                                                                    tcgacatcacgacagggtcgttggtgccgacgtagacgttgtccggggcagtgacggtagcagtgcCCACAGTGC‑ATTGACCTTCACGCTGAGTGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCg                                                                                    <  2:135552‑M1/68‑1 (MQ=255)                                                                                    tcgacatcacgacagggtcgttggtgccgacgtagacgttgtccggggcagtgacggtagcagtgcCCACAGTGC‑ATTGACCTTCACGCTGAGTGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCg                                                                                    >  1:135552‑M1/67‑134 (MQ=255)                                                                                             cgacagggtcgttggtaccgacgtagacattgtccggggcagtgacggtggcagtgcCCACAGTGC‑ATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCAc                                                                             >  1:997996‑M1/58‑132 (MQ=255)                                                                                             cgacagggtcgttggtaccgacgtagacattgtccggggcagtgacggtggcagtgcCCACAGTGC‑ATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCAc                                                                             <  2:997996‑M1/75‑1 (MQ=255)                                                                                                                       acgttgtccggggcagtgacggtagcagtgcCCACAGTGC‑ATTGACCTTCACGCTGGGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTg                                                                                  >  2:322302‑M1/32‑101 (MQ=255)                                                                                                                       acgttgtccggggcagtgacggtagcagtgcCCACAGTGC‑ATTGACCTTCACGCTGGGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTg                                                                                  <  1:322302‑M1/70‑1 (MQ=255)                                                                                                                                                      CCACAGTGC‑ATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGa  <  1:228172‑M1/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                       CTGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGACGGCTTGCCGATCAATAACCACAGTGC‑ATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGA  >  NC_002947/204893‑205191

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.