New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1175069 =	47 (1.040)	5 (0.110)	5/240	NT	10.4%	coding (138/558 nt)	PP_1030	hypothetical protein
	?	NC_002947	1175092 =	41 (0.940)					coding (161/558 nt)	PP_1030	hypothetical protein

CTTGTCCCGTTCATGAACACCCAGAGCATCATCGTTCCAAAGCTGTCTACCGTCCCGGTGCATGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAA  >  NC_002947/1174920‑1175207                                                                                                                                                      |                                                                                                                                            tacctcgcgccggcactccgggcaaccggcttcttcgaggaagccttcggtgggggtatagatgcagcgtttgagcatcacttccaggccgttgaccggttcgccgaagggcagtttttccgggtgcagggccactttgcgcgcccctgc                                                                                                                                             <  2:146235‑M1/1‑1 (MQ=255)    ctcgcgccggcactccgggcaaccggcttcttcgaggaagccttcggtgggggtatagatgcagcgtttgagcatcacttccaggccgttgaccggttcgccgaagggcagtttttccgggtgcagggccactttgcgcgcccctgCCGc                                                                                                                                          <  2:994644‑M1/4‑1 (MQ=255)        cGTTCATGAACACCCAGAGCATCATCGTTCCAAAGCTGTCTACCGTCCCGGTGCATGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATgg                                                                                                                                      >  2:486047/1‑150 (MQ=255)             aTGAACACCCAGAGCATCATCGTTCCAAAGCTGTCTACCGTCCCGGTGCATGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAACGGCCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCAt                                                                                                                                 <  1:688763/150‑1 (MQ=255)             aTGAACACCCAGAGCATCATCGTTCCAAAGCTGTCTACCGTCCCGGTGCATGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCAt                                                                                                                                 <  2:1196373/150‑1 (MQ=255)              tGAACACCCAGAGCAACCTCCTTCCAAAGCTGTCTACCGTCCCGGTGCATGAAGCCCGTGCCCGCCCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATg                                                                                                                                <  1:61838/150‑1 (MQ=255)                 tccgggcaaccggcttcttcgaggaagccttcggtgggggtatagatgcagcgtttgagcatcacttccaggccgttgaccggttcgccgaagggcagtttttccgggtgcagggccactttgcgcgcccctgCCGCATGGGCCATG‑ccc                                                                                                                            <  1:670638‑M1/17‑1 (MQ=255)                      cAGAGCATCATCGTTCCAAAGCTGTCTACCGTCCCGGTGCATGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTggcg                                                                                                                       >  2:931145/1‑150 (MQ=255)                         accggcttcttcgaggaagccttcggtgggggtatagatgcagcgtttgagcatcacttccaggccgttgaccggttcgccgaagggcagtttttccgggtgcagggccactttgcgcgcccctgCCGCATGGGCCATG‑CCCTGGCGGCa                                                                                                                    >  1:968995‑M1/126‑150 (MQ=255)                           catcatCGTTCCAAAGCTGTCTACCGTCCCGGTGCATGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAgg                                                                                                                  >  1:1026414/1‑150 (MQ=255)                            atcatcGTTCCAAAGCTGTCTACCGTCCCGGTGCATGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAggg                                                                                                                 >  1:1048804/1‑150 (MQ=255)                               atcGTTCCAAAGCTGTCTACCGTCCCGGTGCATGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGgcg                                                                                                              >  2:495363/1‑150 (MQ=255)                                       aaaGCTGTCTACCGTCCCGGTGCATGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTGCTCGAGGAGCATCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGt                                                                                                      >  1:146235/1‑150 (MQ=255)                                         aGCTGTCTACCGTCCCGGTGCATGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTgg                                                                                                    <  2:139269/150‑1 (MQ=255)                                           cTGTCTACCGTCCCGGTGCATGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGcc                                                                                                  <  1:622677/150‑1 (MQ=255)                                             gTCTACCGTCCCGGTGCATGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTgg                                                                                                                         >  2:1141034/1‑125 (MQ=255)                                             gTCTACCGTCCCGGTGCATGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTgg                                                                                                                         <  1:1141034/125‑1 (MQ=255)                                                 aCCGTCCCGGTGCATGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGc                                                                                                   >  1:171325/1‑143 (MQ=255)                                                 aCCGTCCCGGTGCATGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGc                                                                                                   >  2:645237/1‑143 (MQ=255)                                                 aCCGTCCCGGTGCATGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGc                                                                                                   <  2:171325/143‑1 (MQ=255)                                                 aCCGTCCCGGTGCATGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGc                                                                                                   <  1:645237/143‑1 (MQ=255)                                                  ccGTCCCGGTGCATGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCAcc                                                                                           <  2:1026414/150‑1 (MQ=255)                                                   cGTCCCGGTGCATGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCAccc                                                                                          <  1:364963/150‑1 (MQ=255)                                                   cGTCCCGGTGCATGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCAccc                                                                                          <  1:495363/150‑1 (MQ=255)                                                   cGTCCCGGTGCATGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCAccc                                                                                          <  2:603730/150‑1 (MQ=255)                                                          gTGCATGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTAGAGGGGCAGCTGACCACGGTTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGaaaaa                                                                                   >  1:450296/1‑150 (MQ=255)                                                              gagAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGc                                                                               >  1:644901/3‑150 (MQ=255)                                                              aTGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGc                                                                               <  1:931145/150‑1 (MQ=255)                                                               tGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGcc                                                                              >  1:1095656/1‑150 (MQ=255)                                                                             gcgcCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCCTG‑CCCTGCCGCCAGGTGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCgg                                                                >  1:445167/1‑150 (MQ=255)                                                                             gcgcCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCgg                                                                <  1:195597/150‑1 (MQ=255)                                                                              cgcCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGTCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGt                                                               <  1:13341/150‑1 (MQ=255)                                                                                 cATCCTGCGCTGGCTGGTTCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCaa                                                            >  2:352581/1‑150 (MQ=255)                                                                                 cATCCTGCGCGGGCTGGTACGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCaa                                                            >  2:352553/1‑150 (MQ=255)                                                                                   tCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATggg                                                                                                                                     <  2:497474/76‑1 (MQ=255)                                                                                   tCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATggg                                                                                                                                     >  1:497474/1‑76 (MQ=255)                                                                                              ctggTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTg                                               <  1:959449/150‑1 (MQ=255)                                                                                                  tGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGa                                              >  2:164317/1‑147 (MQ=255)                                                                                                  tGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGa                                              <  1:164317/147‑1 (MQ=255)                                                                                                  tGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGc                                           >  1:1003798/1‑150 (MQ=255)                                                                                                        ccgaagggcagtttttccgggtgcagggccactttgcgcgcccctgCCGCATGGGCCATG‑CCCTGGCGGCAggg                                                                                                                 >  1:886177‑M1/47‑74 (MQ=255)                                                                                                        ccgaagggcagtttttccgggtgcagggccactttgcgcgcccctgCCGCATGGGCCATG‑CCCTGGCGGCAggg                                                                                                                 <  2:886177‑M1/28‑1 (MQ=255)                                                                                                                gtcgAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATc                             >  2:220011/1‑150 (MQ=255)                                                                                                                gtcgAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAAACGCATGGGCAATG‑ACATACCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATc                             >  1:1053137/1‑150 (MQ=255)                                                                                                                      gagCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATAcc                       <  2:1003798/150‑1 (MQ=255)                                                                                                                          agcTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCa                   >  1:149886/1‑150 (MQ=255)                                                                                                                          agcTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCa                   <  2:1053137/150‑1 (MQ=255)                                                                                                                                 caccTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTg                                 <  1:272994/129‑1 (MQ=255)                                                                                                                                 caccTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTg                                 >  2:272994/1‑129 (MQ=255)                                                                                                                                 caccTGTGGCCGCACCGGTAACCACATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAgg            >  2:517993/1‑150 (MQ=255)                                                                                                                                   gccactttgcgcgcccctgCCGCCAGGGC‑ATGGCCCATGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCAGCATCTATAACACCACGGAAGgcg          <  2:670638‑M1/131‑2 (MQ=255)                                                                                                                                      gtgGCCGCACCGGTAACCGCTTGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATGCCCCCACCGAAGGCTTcc       <  2:1153676/150‑1 (MQ=255)                                                                                                                                          ccGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCga   >  1:107288/1‑150 (MQ=255)                                                                                                                                           cGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCgaa  <  2:455960/150‑1 (MQ=255)                                                                                                                                                  gTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTc        >  2:348145/1‑137 (MQ=255)                                                                                                                                                  gTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTc        <  1:348145/137‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                            CTTGTCCCGTTCATGAACACCCAGAGCATCATCGTTCCAAAGCTGTCTACCGTCCCGGTGCATGAAGCCCGTGCCCGCGCCATCCTGCGCTGGCTGGTGCGCGAAAAGGTCGTCGAGGAGCAGCTGACCACCTGTGGCCGCACCGGTAACCGCATGGGCCATG‑CCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAA  >  NC_002947/1174920‑1175207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.