New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1177323 =	37 (0.820)	4 (0.090)	4/244	NT	9.3%	coding (200/1578 nt)	guaA	glutamine‑hydrolyzing GMP synthase
	?	NC_002947	1177348 =	42 (0.950)					coding (225/1578 nt)	guaA	glutamine‑hydrolyzing GMP synthase

CCAGTACACCCAGCTGATCGCCCGCCGCGTGCGCGAAATCGGCGTGTACTGCGAACTGCACCCGTTCGACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGCTATGCCCGTGTGGACGTTGTC  >  NC_002947/1177174‑1177471                                                                                                                                                      |                                                                                                                                                      ccAGTACACCCAGCTGATCGCCCGCCGCGTGCGCGAAATCGGCGTGTACTGCGAACTGCACCCGTTCGACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCaa                                                                                                                                                       <  2:479944/150‑1 (MQ=255)    gTACACCCAGCTGATCGCCCGCCGCGTGCGCGAAATCGGCGTGTACTGCGAACTGCACCCGTTCGACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAg                                                                                                                                                    >  1:139510/1‑150 (MQ=255)          ccAGCTGATCGCCCGCCGCGTGCGCGAAATCGGCGTGTACTGCGAACTGGACCCGTTCGACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCcgcg                                                                                                                                              >  1:578288/1‑150 (MQ=255)           cAGCTGAGCGCCCGCCGCGTGCGCGAAATCGGCGTGTACTGCGAACTGCACCCGTTCGACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCcgcg‑c                                                                                                                                            <  2:453035/150‑1 (MQ=255)                             gTGCGCGAAATCGGCGTGTACTGCGAACTGCACCCGTTCGACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGCAGCCAGCAGCCCGCG‑CGCTCCGCAGGCCGTGttt                                                                                                                          >  2:1057352/1‑150 (MQ=255)                               gcgcGAAATCGGCGTGTACTGCGAACTGCACCCGTTCGACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGa                                                                                                                        <  2:762735/150‑1 (MQ=255)                                cgcgAAATCGGCGTGTACTGCGAACTGCACCCGTTCGACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCCAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCCCGGCAGCCCGTGCTTggc                                                                                                                       <  2:321864/150‑3 (MQ=255)                                  cgAAATCGGCGTGTACTGCGAACTGCACCCGTTCGACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCt                                                                                                                     >  2:475582/1‑150 (MQ=255)                                   gAAATCGGCGTGTACTGCGAACTGCACCCGTTCGACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTg                                                                                                                    >  1:211018/1‑150 (MQ=255)                                          gCGTGTACTGCGAACTGCACCCGTTCGACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGc                                                                                                             <  1:775566/150‑1 (MQ=255)                                          gCGTGTACTGCCATCTTCTCCCGTTCGACATGGACGATGAAGCGCTCCGCGAATTCAACCCGCTCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGc                                                                                                             <  2:578288/150‑1 (MQ=255)                                                          gcaggtcggaaccttctaccttgccgcccatctgctcggccatggtctgcatgccgtagcagatacccagcacaggcacattcaggtcaaacACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGAcc                                                                                                                      >  1:862699‑M1/93‑125 (MQ=255)                                                          gcaggtcggaaccttctaccttgccgcccatctgctcggccatggtctgcatgccgtagcagatacccagcacaggcacattcaggtcaaacACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGAcc                                                                                                                      <  2:862699‑M1/33‑1 (MQ=255)                                                           cACCCGTTCGACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGc                                                                                            <  2:922498/150‑1 (MQ=255)                                                             cccGTTCGACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTa                                                                                          >  2:274719/1‑150 (MQ=255)                                                                    gACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATg                                                                                   >  2:1139495/1‑150 (MQ=255)                                                                          gACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGAcc                                                                             >  2:36404/1‑150 (MQ=255)                                                                          gACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGAc                                                                              >  2:95630/1‑149 (MQ=255)                                                                          gACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGAc                                                                              <  1:95630/149‑1 (MQ=255)                                                                              aTGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATgg                                                                         >  2:682207/1‑150 (MQ=255)                                                                                          gcgAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATgg                                                             >  1:697226/1‑150 (MQ=255)                                                                                          gcgAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATgg                                                             >  1:697176/1‑150 (MQ=255)                                                                                           gctcggccatggtctgcatgccgtagcagatacccagcacaggcacattcaggtcaaacACAGCCCGCG‑CGCTCCGCAGGCCGTGttt                                                                                                                          <  2:226725‑M1/29‑1 (MQ=255)                                                                                           gctcggccatggtctgcatgccgtagcagatacccagcacaggcacattcaggtcaaacACAGCCCGCG‑CGCTCCGCAGGCCGTGttt                                                                                                                          >  1:226725‑M1/60‑88 (MQ=255)                                                                                                  aaCCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGTCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAg                                                     <  1:1057352/150‑1 (MQ=255)                                                                                                  aaCCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCAAAAAGCCAGCGACGC‑CCTCAGGCCGTGTTTGACCTGAATGTCCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAg                                                     <  1:274719/150‑1 (MQ=255)                                                                                                        cgcgGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGaa                                               >  1:694867/1‑150 (MQ=255)                                                                                                                   ccTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCt                                                                                                           <  2:1126293/79‑1 (MQ=255)                                                                                                                   ccTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCt                                                                                                           >  1:1126293/1‑79 (MQ=255)                                                                                                                     tCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGc                                  <  1:1139495/150‑1 (MQ=255)                                                                                                                       catctccgcCCCGCGGCGGTCCACGAAGCCCACAGGCCGCT‑CTTCCGGCCGTCCTTGTTTGAGCTGAATGTGCCTGTCCTAGTTATTTGCGAAGGCATGCAGACCATGGCCGAGCAGAGCGGCCGCCAGCTAGAAGGTTCCGCCCTGCGt                                <  2:182567/143‑1 (MQ=255)                                                                                                                           gcggcCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGt                            >  2:508838/1‑150 (MQ=255)                                                                                                                             ggcCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGGAGAAGGTTCCGACCTGCGTGAGATc                          >  1:182567/1‑150 (MQ=255)                                                                                                                                 ccGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGc                                  <  2:417982/138‑1 (MQ=255)                                                                                                                                 ccGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGc                                  >  1:417982/1‑138 (MQ=255)                                                                                                                                  cGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATgg                                                                         <  2:154168/98‑1 (MQ=255)                                                                                                                                  cGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATgg                                                                         >  1:154168/1‑98 (MQ=255)                                                                                                                                     gTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGCTATGc                  <  1:475582/150‑1 (MQ=255)                                                                                                                                        ggTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGCTATGCCCg               >  2:803565/1‑150 (MQ=255)                                                                                                                                          tCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGCTATGCCCgtg             >  1:529097/1‑150 (MQ=255)                                                                                                                                            cACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACATGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAgg                                             <  2:829535/116‑1 (MQ=255)                                                                                                                                            cACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACATGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAgg                                             >  1:829535/1‑116 (MQ=255)                                                                                                                                               gAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGCTATGCCCGTGTGGAc        <  2:529097/150‑1 (MQ=255)                                                                                                                                                     aaCAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGc                       <  2:633895/129‑1 (MQ=255)                                                                                                                                                     aaCAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGc                       >  1:633895/1‑129 (MQ=255)                                                                                                                                                     aaCAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGCTATGCCCGTGTGGACGTTGTc  >  1:756655/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                      CCAGTACACCCAGCTGATCGCCCGCCGCGTGCGCGAAATCGGCGTGTACTGCGAACTGCACCCGTTCGACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGCTATGCCCGTGTGGACGTTGTC  >  NC_002947/1177174‑1177471

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.