New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1177323 =	37 (0.820)	4 (0.090)	4/244	NT	9.3%	coding (200/1578 nt)	guaA	glutamine‑hydrolyzing GMP synthase
	?	NC_002947	1177348 =	42 (0.950)					coding (225/1578 nt)	guaA	glutamine‑hydrolyzing GMP synthase

GTGCGCGAAATCGGCGTGTACTGCGAACTGCACCCGTTCGACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGCTATGCCCGTGTGGACGTTGTCGGCAAGAGCCGCCTGCTCGACGG  >  NC_002947/1177202‑1177494                                                                                                                                                    |                                                                                                                                                   gTGCGCGAAATCGGCGTGTACTGCGAACTGCACCCGTTCGACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGCAGCCAGCAGCCCGCG‑CGCTCCGCAGGCCGTGttt                                                                                                                                                 >  2:1057352/1‑150 (MQ=255)   gcgcGAAATCGGCGTGTACTGCGAACTGCACCCGTTCGACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGa                                                                                                                                               <  2:762735/150‑1 (MQ=255)    cgcgAAATCGGCGTGTACTGCGAACTGCACCCGTTCGACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCCAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCCCGGCAGCCCGTGCTTggc                                                                                                                                              <  2:321864/150‑3 (MQ=255)      cgAAATCGGCGTGTACTGCGAACTGCACCCGTTCGACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCt                                                                                                                                            >  2:475582/1‑150 (MQ=255)       gAAATCGGCGTGTACTGCGAACTGCACCCGTTCGACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTg                                                                                                                                           >  1:211018/1‑150 (MQ=255)              gCGTGTACTGCGAACTGCACCCGTTCGACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGc                                                                                                                                    <  1:775566/150‑1 (MQ=255)              gCGTGTACTGCCATCTTCTCCCGTTCGACATGGACGATGAAGCGCTCCGCGAATTCAACCCGCTCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGc                                                                                                                                    <  2:578288/150‑1 (MQ=255)                              gcaggtcggaaccttctaccttgccgcccatctgctcggccatggtctgcatgccgtagcagatacccagcacaggcacattcaggtcaaacACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGAcc                                                                                                                                             <  2:862699‑M1/33‑1 (MQ=255)                              gcaggtcggaaccttctaccttgccgcccatctgctcggccatggtctgcatgccgtagcagatacccagcacaggcacattcaggtcaaacACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGAcc                                                                                                                                             >  1:862699‑M1/93‑125 (MQ=255)                               cACCCGTTCGACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGc                                                                                                                   <  2:922498/150‑1 (MQ=255)                                 cccGTTCGACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTa                                                                                                                 >  2:274719/1‑150 (MQ=255)                                        gACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATg                                                                                                          >  2:1139495/1‑150 (MQ=255)                                              gACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGAcc                                                                                                    >  2:36404/1‑150 (MQ=255)                                              gACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGAc                                                                                                     >  2:95630/1‑149 (MQ=255)                                              gACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGAc                                                                                                     <  1:95630/149‑1 (MQ=255)                                                  aTGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATgg                                                                                                >  2:682207/1‑150 (MQ=255)                                                              gcgAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATgg                                                                                    >  1:697176/1‑150 (MQ=255)                                                              gcgAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATgg                                                                                    >  1:697226/1‑150 (MQ=255)                                                               gctcggccatggtctgcatgccgtagcagatacccagcacaggcacattcaggtcaaacACAGCCCGCG‑CGCTCCGCAGGCCGTGttt                                                                                                                                                 >  1:226725‑M1/60‑88 (MQ=255)                                                               gctcggccatggtctgcatgccgtagcagatacccagcacaggcacattcaggtcaaacACAGCCCGCG‑CGCTCCGCAGGCCGTGttt                                                                                                                                                 <  2:226725‑M1/29‑1 (MQ=255)                                                                      aaCCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGTCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAg                                                                            <  1:1057352/150‑1 (MQ=255)                                                                      aaCCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCAAAAAGCCAGCGACGC‑CCTCAGGCCGTGTTTGACCTGAATGTCCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAg                                                                            <  1:274719/150‑1 (MQ=255)                                                                            cgcgGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGaa                                                                      >  1:694867/1‑150 (MQ=255)                                                                                       ccTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCt                                                                                                                                  <  2:1126293/79‑1 (MQ=255)                                                                                       ccTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCt                                                                                                                                  >  1:1126293/1‑79 (MQ=255)                                                                                         tCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGc                                                         <  1:1139495/150‑1 (MQ=255)                                                                                           catctccgcCCCGCGGCGGTCCACGAAGCCCACAGGCCGCT‑CTTCCGGCCGTCCTTGTTTGAGCTGAATGTGCCTGTCCTAGTTATTTGCGAAGGCATGCAGACCATGGCCGAGCAGAGCGGCCGCCAGCTAGAAGGTTCCGCCCTGCGt                                                       <  2:182567/143‑1 (MQ=255)                                                                                               gcggcCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGt                                                   >  2:508838/1‑150 (MQ=255)                                                                                                 ggcCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGGAGAAGGTTCCGACCTGCGTGAGATc                                                 >  1:182567/1‑150 (MQ=255)                                                                                                     ccGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGc                                                         <  2:417982/138‑1 (MQ=255)                                                                                                     ccGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGc                                                         >  1:417982/1‑138 (MQ=255)                                                                                                      cGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATgg                                                                                                >  1:154168/1‑98 (MQ=255)                                                                                                      cGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATgg                                                                                                <  2:154168/98‑1 (MQ=255)                                                                                                         gTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGCTATGc                                         <  1:475582/150‑1 (MQ=255)                                                                                                            ggTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGCTATGCCCg                                      >  2:803565/1‑150 (MQ=255)                                                                                                              tCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGCTATGCCCgtg                                    >  1:529097/1‑150 (MQ=255)                                                                                                                cACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACATGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAgg                                                                    <  2:829535/116‑1 (MQ=255)                                                                                                                cACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACATGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAgg                                                                    >  1:829535/1‑116 (MQ=255)                                                                                                                   ggtcaaacacggcctgcggagcgcgcgggctgtGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGc                                                         <  2:862699‑M2/92‑1 (MQ=255)                                                                                                                   ggtcaaacacggcctgcggagcgcgcgggctgtGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGc                                                         >  1:862699‑M2/34‑125 (MQ=255)                                                                                                                   gAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGCTATGCCCGTGTGGAc                               <  2:529097/150‑1 (MQ=255)                                                                                                                       aaacacggcctgcggagcgcgcgggctgtGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGc                                                                                          >  1:226725‑M2/30‑88 (MQ=255)                                                                                                                       aaacacggcctgcggagcgcgcgggctgtGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGc                                                                                          <  2:226725‑M2/59‑1 (MQ=255)                                                                                                                         aaCAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGc                                              >  1:633895/1‑129 (MQ=255)                                                                                                                         aaCAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGc                                              <  2:633895/129‑1 (MQ=255)                                                                                                                         aaCAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGCTATGCCCGTGTGGACGTTGTc                         >  1:756655/1‑150 (MQ=255)                                                                                                                             gCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGCTATGCCCGTGTGGACGTTGTCGGCa                     <  2:694867/150‑1 (MQ=255)                                                                                                                                cgcg‑cgCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGCTATGCCCGTGTGGACGTTGTCGGCAaga                  <  2:139510/150‑1 (MQ=255)                                                                                                                                  cg‑cgcTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGCTATGCCCGTGTGGACGTTGTCGGCAAGAgc                <  1:508838/150‑1 (MQ=255)                                                                                                                                   g‑cgcTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGCTATGCCCGTGTGGACGTTGTCGGCAAGAgcc               <  1:803565/150‑1 (MQ=255)                                                                                                                                            cAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGaa                                                                      >  2:50063/1‑87 (MQ=255)                                                                                                                                            cAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGaa                                                                      <  1:50063/87‑1 (MQ=255)                                                                                                                                                 cGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGCTATGCCCGTGTGGAc                               >  2:418368/1‑121 (MQ=255)                                                                                                                                                 cGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGCTATGCCCGTGTGGAc                               <  1:418368/121‑1 (MQ=255)                                                                                                                                                 cGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGCTATGCCCGTGTGGACGTTGTCGGCAAGAGCCGCCTGCTCGACgg  >  1:701943/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GTGCGCGAAATCGGCGTGTACTGCGAACTGCACCCGTTCGACATGGACGATGAAGCGATCCGCGAATTCAACCCGCGCGGCATCATCCTCGCCGGCGGCCCCGAGTCGGTCCACGAAGCCAACAGCCCGCG‑CGCTCCGCAGGCCGTGTTTGACCTGAATGTGCCTGTGCTGGGTATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAAGGTAGAAGGTTCCGACCTGCGTGAGTTCGGCTATGCCCGTGTGGACGTTGTCGGCAAGAGCCGCCTGCTCGACGG  >  NC_002947/1177202‑1177494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.