New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1370042	29 (0.640)	2 (0.050)	3/238	NT	6.5%	coding (832/1719 nt)	PP_1195	hypothetical protein
	?	NC_002947	= 1370064	30 (0.690)					coding (854/1719 nt)	PP_1195	hypothetical protein

TGCGCGATGCCCGGGGAGAAGTCGTGGCGACCCGTATCGAACGGGCACCGGGGTTGAGGGAGGCCAGCGCCATCGGCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGGCGCCAGCTTGAAGTGGCACAAACCCGTCCAGACCCGAGCCTGCCTTTTGCTGGTCGTGTCCAGCAGGCGGTGGTTGAAGGGCTGGTACAGCGTACACAAGCTCGGCAGTTGGTGGTTGCAGGTCTCAA  >  NC_002947/1369893‑1370190                                                                                                                                                      |                                                                                                                                                      tGCGCGATGCCCGGGGAGAAGTCGTGGCGACCCGTATCGAACGGGCACCGGGGTTGAGGGAGGCCAGCGCCATCGGCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGG                                                                                                                                                       >  2:765059‑M1/1‑150 (MQ=255)    gcgATGCCCGGGGAGAAGTCGTGGCGACCCGTATCGAACGGGCACCGGGGTTGAGGGAGGCCAGCGCCATCGGCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTgc                                                                                                                                                    >  1:1193437/1‑150 (MQ=255)           ccGGGGAGAAGTCGTGGCGACCCGTATCGAACGGGCACCGGGGTTGAGGGAGGCCAGCGCCATCGGCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCa                                                                                                                                            >  1:40030/1‑150 (MQ=255)                     gTCGTGGCGACCCGTATCGAACGGGCACCGGGGTTGAGGGAGGCCAGCGCCATCGGCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCggg                                                                                                                                  >  2:707917/1‑150 (MQ=255)                     gTCGTGGCGACCCGTATCGAACGGGCACCGGGGTTGAGGGAGGCCAGCGCCATCGGCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCggg                                                                                                                                  <  2:778842/150‑1 (MQ=255)                      tCGTGGCGACCCGTATCGAACGGGCACCGGGGTTGAGGGAGGCCAGCGCCATCGGCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGgc                                                                                                                                 <  1:707917/150‑1 (MQ=255)                        gTGGCGACCCGTATCGAACGGGCACCGGGGTTGAGGGAGGCCAGCGCCATCGGCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGGCGc                                                                                                                               <  2:524798‑M2/150‑2 (MQ=255)                         tGGCGACCCGTATCGAACGGGCACCGGGGTTGAGGGAGGCCAGCGCCATCGGCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAg                                                                                                                                           <  1:781481/137‑1 (MQ=255)                         tGGCGACCCGTATCGAACGGGCACCGGGGTTGAGGGAGGCCAGCGCCATCGGCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAg                                                                                                                                           >  2:781481/1‑137 (MQ=255)                                ccGTATCGAACGGGCACCGGGGTTGAGGGAGGCCAGCGCCATCGGCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGG                                                                                                                                                       <  2:7921‑M1/119‑1 (MQ=255)                                ccGTATCGAACGGGCACCGGGGTTGAGGGAGGCCAGCGCCATCGGCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGG                                                                                                                                                       >  1:7921‑M1/1‑119 (MQ=255)                                 cGTATCGAACGGGCACCGGTGTTGAGGGAGGCCAGCGCCATCGGCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGCGCCCGGTCCACTGG‑CCGCGCAccagcacctc                                                                                                                      >  2:78300‑M2/1‑140 (MQ=255)                                  gTATCGAACGGGCACCGGGGTTGAGGGAGGCCAGTGCCATCGGCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTAAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTAGATCGGGCGCCAGCTTGAAg                                                                                                                     >  2:528919/1‑150 (MQ=255)                                   tATCGAACGGGCACCGGGGTTGAGGGAGGCCAGCGTCATCGGCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGGCGCCAGCTTGAAGt                                                                                                                    <  2:580200/150‑1 (MQ=255)                                   tATCGAACGGGCACCGGGGTTGAGGGAGGCCAGCGCCATCGGCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGt                                                                                                                                                      >  1:162515/1‑117 (MQ=255)                                   tATCGAACGGGCACCGGGGTTGAGGGAGGCCAGCGCCATCGGCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGt                                                                                                                                                      <  2:162515/117‑1 (MQ=255)                                     tCGAACGGGCACCGGGGTTGAGGGAGGCCAGCGCCATCGGCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGGCGCCAGCTTGAAGTgg                                                                                                                  >  1:702779/1‑150 (MQ=255)                                               aCCGGGGTTGAGGGAGGCCAGCGCCATCGGCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTgcgc                                                                                                                                                  <  2:175332/109‑1 (MQ=255)                                               aCCGGGGTTGAGGGAGGCCAGCGCCATCGGCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTgcgc                                                                                                                                                  >  1:175332/1‑109 (MQ=255)                                                ccGGGGTTGAGGGAGGCCAGCGCCATCGGCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGGCGCCAGCTTGAAGTGGCACAAACCCGt                                                                                                       >  2:528305/1‑150 (MQ=255)                                                          gggaggCCAGCGCCATCGGCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGGCGCCAGCTTGAAGTGGCACAAACCCGTCCAGACCCGa                                                                                             >  1:1095377/1‑150 (MQ=255)                                                           ggaggCCAGCGCCATCGGCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGGCGCCAGCTTGAAGTGGCACAAACCCGTCCAGACCCGAg                                                                                            >  2:757832/1‑150 (MQ=255)                                                                           ggCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGcgcccggtccactggccgcgcaccag                                                                                                                             <  2:579366‑M1/102‑27 (MQ=255)                                                                           ggCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGcgcccggtccactggccgcgcaccag                                                                                                                             >  1:579366‑M1/1‑76 (MQ=255)                                                                              gcgGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGGCGCCAGCTTGAAGTGGCACAAACCCGTCCAGACCCGAGCCTGCCTTTTGCTGGTCgt                                                                         >  2:188753/1‑150 (MQ=255)                                                                                    gATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGGCGCCAGCTTGAAGTGGCACAAACCCGTCCAGACCCGAGCCTGCCTTTTGCTGGTCGTGTCcag                                                                   <  2:1095377/150‑1 (MQ=255)                                                                                    gATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGGCGCCAGCTTGAAGTGGCACAAACCCGTCCAGACCCGAGCCTGCCTTTTGCTGGTCGTGTCcag                                                                   >  2:164007/1‑150 (MQ=255)                                                                                      tCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGGCGCCAGCTTGAAGTGGCACAAACCCGTCCAGACCCGAGCCTGCCTTTTGCTGGTCGTGTCcagca                                                                 >  1:1134631/1‑150 (MQ=255)                                                                                         cACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGGCGCCAGCTTGAAGTGGCACAAACCCGTCCAGACCCGAGCCTGCCTTTTGCTGGTCGTGTCCAGCAGGc                                                              <  2:1160333/150‑1 (MQ=255)                                                                                             ggCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGGGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGGTGCCAGCTTGAAGTGGCACAAACCCGTCCAGACACGAGCCTGCCTTTTGCTGGTCGTGTCCAGCAGGCggtg                                                          <  1:528919/150‑1 (MQ=255)                                                                                              gCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGGCGCCAGCTTGAAGTGGCACAAACCCGTCCAGACCCGAGCCTGCCTTTTGCTGGTCGTGTCCAGCAGGCggtgg                                                         <  2:158457/150‑1 (MQ=255)                                                                                                aGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGGCGCCAGCTTGAAGTGGCACAAACCCGTCCAGACCCGAGCCTGCCTTTTGCTGGTCGTGTCCAGCAGGCGGTGGtt                                                       <  1:164007/150‑1 (MQ=255)                                                                                                   cTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGGCGCCAGCTTGAAGTGGCACAAACCCGTCCAGACCCGAGCCTGCCTTTTGCTGGTCGTGTCCAGCAGGCGGTGGTTGaa                                                    <  1:765059/150‑1 (MQ=255)                                                                                                         gggTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGGCGCCAGCTTGAAGTGGCACAAACCCGTCCAGACCCGAGCCTGCCTTTTGCTGGTCGTGTCCAGCAGGCGGTGGTTGAAGGGCTg                                              <  1:524798/150‑1 (MQ=255)                                                                                                            ttGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGGCGCCAGCTTGAAGTGGCACAAACCCGTCCAGACCCGAGCCTGCCTTTTGCTGGTCGTGTCCAGCAGGCGGTGGTTGAAGGGCTGGTa                                           >  1:398984/1‑150 (MQ=255)                                                                                                                aGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGGCGCCAGCTTGAAGTGGCACAAACCCGTCCAGACCCGAGCCTGCCTTTTGCTGGTCGTGTCCAGCAGGCGGTGGTTGAAGGGCTGGTACAGc                                       <  2:40030/150‑1 (MQ=255)                                                                                                                            gtgtGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGGCGCCAGCTTGAAGTGGCACAAACCCGTCCAGACCCGAGCCTGCCTTTTGCTGGTCGTGTCCAGCAGGCGGTGGTTGAAGGGCTGGTACAGCGTACACAAGCTc                           <  2:702779/150‑1 (MQ=255)                                                                                                                            gtgtGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGGCGCCAGCTTGAAGTGGCACAAACCCGTCCAGACCCGAGCCTGCCTTTTGCTGGTCGTGTCCAGCAGGCGGTGGTTGAAGGGCTGGTACAGCGTACACAAGCTc                           <  2:1193437/150‑1 (MQ=255)                                                                                                                                ggCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGGCGCCAGCTTGAAGTGGCACAAACCCGTCCAGACCCGAGCCTGCCTTTTGCTGGTCGTGTCCAGCAGGCGGTGGTTGAAGGGCTGGTACAGCGTACACAAGCTCGGCa                       <  1:757832/150‑1 (MQ=255)                                                                                                                                 gcgcCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGGCGCCAGCTTGAAGTGGCACAAACCCGTCCAGACCCGAGCCTGCCTTTTGCTGGTCGTGTGCAGCAGGCGGTGGTTGAAGGGCTGGTACAGCGTACACAAGCTCGGCAg                      >  1:73474/1‑150 (MQ=255)                                                                                                                                             gAGGTGCTGGtgcgcggccagtggaccgggcgccagcacctcacgagcaggcgccacacgggtacccaacttcaacccttgaaggctgccagtgcgatcaaccgcgccgatggcgctggcctccctcaacaccggtgcccgttcgatacg           >  2:78300‑M1/1‑10 (MQ=255)                                                                                                                                                gTGCTGGTGCGCGG‑CCAGTGGACCGGGCGCCAGCTTGAAGTGGCACAAACCCGTCCAGACCCGAGCCTGCCTTTTGCTGGTCGTGTCCAGCAGGCGGTGGTTGAAGGGCTGGTACAGCGTACACAAGCTCGGCAGTTGGTGGTTGCAGGt       >  2:1141814/1‑150 (MQ=255)                                                                                                                                                   cTGGTGCGCGG‑CCAGTGGACCGGGCGccagcacctcacgagcaggcgccacacgggtacccaacttcaacccttgaaggctgccagtgcgatcaaccgcgcc                                                    >  1:579366‑M2/1‑26 (MQ=255)                                                                                                                                                   cTGGTGCGCGG‑CCAGTGGACCGGGCGccagcacctcacgagcaggcgccacacgggtacccaacttcaacccttgaaggctgccagtgcgatcaaccgcgcc                                                    <  2:579366‑M2/102‑77 (MQ=255)                                                                                                                                                     ggTGCGCGG‑CCAGTGGACCGGGCGCCAGCTTGAAGTGGCACAAACCCGTCCAGACCCGAGCCTGCCTTTTGCTGGTCGTGTCCAGCAGGCGGTGGTTGAAGGGCTGGTACAGCGTACACAAGCTCGGCAGTTGGTGGTTGCAGGTCTCaa  <  1:188753/150‑1 (MQ=255)                                                                                                                                                      gcgcccggtccactggccgcgcaccagcacctcacgagcaggcgccacacgggtacccaacttcaacccttgaaggctgccagtgcgatcaaccgcgccgatggcgctggcctccctcaaccccggtgcccgttcgatacgggtcgccac  <  2:524798‑M1/150‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                      TGCGCGATGCCCGGGGAGAAGTCGTGGCGACCCGTATCGAACGGGCACCGGGGTTGAGGGAGGCCAGCGCCATCGGCGCGGTTGATCGCACTGGCAGCCTTCAAGGGTTGAAGTTGGGTACCCGTGTGGCGCCTGCTCGTGAGGTGCTGGTGCGCGG‑CCAGTGGACCGGGCGCCAGCTTGAAGTGGCACAAACCCGTCCAGACCCGAGCCTGCCTTTTGCTGGTCGTGTCCAGCAGGCGGTGGTTGAAGGGCTGGTACAGCGTACACAAGCTCGGCAGTTGGTGGTTGCAGGTCTCAA  >  NC_002947/1369893‑1370190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.