| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2078299 | 16 (0.350) | 7 (0.180) | 5/214 | NT | 25.1% | intergenic (+41/+74) | PP_1853/PP_1854 | LysR family transcriptional regulator/hypothetical protein |
| ? | NC_002947 | = 2078346 | 28 (0.720) | intergenic (+88/+27) | PP_1853/PP_1854 | LysR family transcriptional regulator/hypothetical protein | |||||
AGCACAAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTG > NC_002947/2078152‑2078447 | aGCACAAGCTGTTGTTGGGCAAGACCCGGGCGTTAATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGTATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCAc < 1:1151137/150‑1 (MQ=255) gCACAAGATGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCAcc > 2:677194/1‑150 (MQ=255) acaAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCca > 1:263782/1‑150 (MQ=255) caAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCcac > 2:439934/1‑150 (MQ=255) aGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAg < 1:439934/150‑1 (MQ=255) ggCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATcacaa > 1:873909/1‑149 (MQ=255) cGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGt < 1:360720/150‑1 (MQ=255) gTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCTCTGAAGACAGTg < 2:1093203/150‑1 (MQ=255) tttGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTtgt < 1:921996/150‑1 (MQ=255) tgtgGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTgg < 2:718593/150‑1 (MQ=255) tgtgGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTgg < 1:459167/150‑1 (MQ=255) gtggAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGAGGGGTCCTTGTGGGAgg < 1:263917‑M2/150‑3 (MQ=255) ggAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAAGTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgg > 1:939553‑M2/1‑146 (MQ=255) gAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCAcc > 2:717621/1‑101 (MQ=255) gAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCAcc < 1:717621/101‑1 (MQ=255) cAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCtcccacaaggaccccactgtcttcagggctgtgatatccctgtgggtgcgggcgg < 2:729467‑M1/150‑56 (MQ=255) gTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggc < 1:684870‑M2/150‑11 (MQ=255) cGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCtcccacaaggaccccactgtcttcagggctgtgatatccctgtgggt < 1:550102‑M1/134‑48 (MQ=255) cGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCtcccacaaggaccccactgtcttcagggctgtgatatccctgtgggt > 2:550102‑M1/1‑87 (MQ=255) cGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGAACCGGCCTCTTCGCGGGCCCGCCCGCtcccacaaggaccccactgtcttcagggctgtgatatccctgtgggtgcgggcgggcccgcga > 2:226489‑M1/1‑87 (MQ=255) gAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGACCTTGTGGGAgcgggcgggcccgcgaa < 1:763904‑M2/150‑18 (MQ=255) gggCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTCTTCGCGGGCCCGCCCGCtcccacaaggaccccactgtcttcagggctgtgatatccctgtgggtgcgggcgg < 2:125105‑M1/135‑56 (MQ=255) gggCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTCTTCGCGGGCCCGCCCGCtcccacaaggaccccactgtcttcagggctgtgatatccctgtgggtgcgggcgg > 1:125105‑M1/1‑80 (MQ=255) gCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCgg > 1:997681/1‑150 (MQ=255) cggggcggTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGAACCGGCCTCTTCGCGGGCCCGCCCGCtcccacaaggaccccactgtcttcagggctgtgatatccctgtgggtgcgggcgggcccgcgaaaaggccggcacag < 1:226489‑M1/150‑78 (MQ=255) ttCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATc < 2:763904/150‑1 (MQ=255) gATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGAGATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGAc > 2:804047/1‑150 (MQ=255) ccTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGGTATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggc > 1:847261‑M2/1‑104 (MQ=255) ccTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGGTATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggc < 2:847261‑M2/110‑7 (MQ=255) cTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGAGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGaa < 2:873909/150‑1 (MQ=255) tGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGACCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAAc < 1:1089200/150‑1 (MQ=255) gCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccg > 2:193055‑M2/1‑101 (MQ=255) gCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccg < 1:193055‑M2/114‑14 (MQ=255) tttAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGAGGGAGGGCCCGCGCAGAGGCCGGTTCAGACAACAGCGGAAAAGAACGATAACtgt > 1:599404/1‑150 (MQ=255) cTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaagaggccggttcaggcaataattctctaaagggcctgcagggcatcgaaccgccccg < 1:226489‑M2/150‑74 (MQ=255) tgtgCCGCCCTTTACCCCGGCGAGCCGGATCCTACCGGGAAATCAGGGCCATGCAGACACTGAGGTCATCTCGGCAACGGGCGGTCCCGCGAAGAGGCCGGTTCAGACAACATCGACAAGGAACGATACCTGCGCGAACAGATGCCCCtt < 2:300112/150‑2 (MQ=255) ccGGCCTTTTCGCGGGCCCGCTCGCACCCACAGGGGTATCCCAGCCCTCAAGACAGGGCGGTGCTTGTGGGAGCGGGCGGGCCCGGGAAGAGAGGGGATCCGAAAACTACAGCAAGGAACGAAACGTATGCGCGCAGCAGCTCCTCGTCa > 2:229968/1‑150 (MQ=255) ttCGCGGGCCCGCCCGCtcccacaaggtccccactgtcttcagggctgtgatatccctgtgggtgcgggcgggcccgcgaaaaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctc < 1:763904‑M1/150‑134 (MQ=255) tCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaagaggccggttcaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctcg > 2:226489‑M2/1‑63 (MQ=255) gcgGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgg < 2:809661‑M2/65‑5 (MQ=255) gcgGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgg > 1:809661‑M2/1‑61 (MQ=255) cgGGCCCGCCCGCtcccacaaggaccccactgtcttcagggctgtgatatccctgtgggtgcgggcgggcccgcgaaaaggccggcacaggcaataattctctaaagggcctgc > 2:193055‑M1/1‑13 (MQ=255) cgGGCCCGCCCGCtcccacaaggaccccactgtcttcagggctgtgatatccctgtgggtgcgggcgggcccgcgaaaaggccggcacaggcaataattctctaaagggcctgc < 1:193055‑M1/114‑102 (MQ=255) gcccgcccGCtcccacaaggaccccactgtcttcagggctgtgatatccctgtgggtgcgggcgggcccgcgaaaaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctcggcaaac < 1:684870‑M1/150‑141 (MQ=255) ccgcccgcACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaagaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagccc < 2:125105‑M2/135‑81 (MQ=255) ccgcccgcACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaagaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagccc > 1:125105‑M2/1‑55 (MQ=255) ccgcccgcACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaaaaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctcggcaaactg < 2:729467‑M2/150‑96 (MQ=255) gcccgctcccacaaggaccccactgtcttcagggctgtgatacccctgtgggtgcgggcgggcccgcgaaaaggccggcacaggcaataattctctaaagggcctgcagg < 2:847261‑M1/110‑105 (MQ=255) gcccgctcccacaaggaccccactgtcttcagggctgtgatacccctgtgggtgcgggcgggcccgcgaaaaggccggcacaggcaataattctctaaagggcctgcagg > 1:847261‑M1/1‑6 (MQ=255) ccgctcccacaaggaccccactgtcttcagggctgtgatatccctgtgggtgcgggcgggcccgcgaaaaggccggcacaggcaatacttctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctcggcaaactgctcc > 1:939553‑M1/1‑4 (MQ=255) ccgctcccacaaggaccccactgtcttcagggctgtgatatccctgtgggtgcgggcgggcccgc > 1:809661‑M1/1‑4 (MQ=255) ccgctcccacaaggaccccactgtcttcagggctgtgatatccctgtgggtgcgggcgggcccgc < 2:809661‑M1/65‑62 (MQ=255) cgcACCCACCGGGATATCGAGCCCCTGCAGACAGTGGGGTCTTTGTGGGTCTTAGCGTTCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGtt < 2:263917/150‑1 (MQ=255) cctcccacaaggacccctctgtcttcagggctgtgatatccctgtgggtgcgggcgggcccgcgaaaaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctcggcaaactgctccac < 1:263917‑M1/149‑149 (MQ=255) | AGCACAAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTG > NC_002947/2078152‑2078447 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |