New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2078299	16 (0.350)	7 (0.180)	5/214	NT	25.1%	intergenic (+41/+74)	PP_1853/PP_1854	LysR family transcriptional regulator/hypothetical protein
	?	NC_002947	= 2078346	28 (0.720)					intergenic (+88/+27)	PP_1853/PP_1854	LysR family transcriptional regulator/hypothetical protein

GTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTGGGGTAATCACCGTCACCA  >  NC_002947/2078199‑2078485                                                                                                                                                    |                                                                                                                                            gtggAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGAGGGGTCCTTGTGGGAgg                                                                                                                                           <  1:263917‑M2/150‑3 (MQ=255)   ggAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAAGTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgg                                                                                                                                         >  1:939553‑M2/1‑146 (MQ=255)         gTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggc                                                                                                                                   <  1:684870‑M2/150‑11 (MQ=255)                gAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGACCTTGTGGGAgcgggcgggcccgcgaa                                                                                                                            <  1:763904‑M2/150‑18 (MQ=255)                        gCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCgg                                                                                                                    >  1:997681/1‑150 (MQ=255)                                     ttCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATc                                                                                                       <  2:763904/150‑1 (MQ=255)                                        gATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGAGATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGAc                                                                                                    >  2:804047/1‑150 (MQ=255)                                             ccTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGGTATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggc                                                                                                                                       <  2:847261‑M2/110‑7 (MQ=255)                                             ccTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGGTATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggc                                                                                                                                       >  1:847261‑M2/1‑104 (MQ=255)                                              cTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGAGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGaa                                                                                              <  2:873909/150‑1 (MQ=255)                                               tGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGACCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAAc                                                                                             <  1:1089200/150‑1 (MQ=255)                                                gCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccg                                                                                                                                <  1:193055‑M2/114‑14 (MQ=255)                                                gCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccg                                                                                                                                >  2:193055‑M2/1‑101 (MQ=255)                                                        tttAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGAGGGAGGGCCCGCGCAGAGGCCGGTTCAGACAACAGCGGAAAAGAACGATAACtgt                                                                                    >  1:599404/1‑150 (MQ=255)                                                                        cTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaagaggccggttcaggcaataattctctaaagggcctgcagggcatcgaaccgccccg                                                                    <  1:226489‑M2/150‑74 (MQ=255)                                                                         tgtgCCGCCCTTTACCCCGGCGAGCCGGATCCTACCGGGAAATCAGGGCCATGCAGACACTGAGGTCATCTCGGCAACGGGCGGTCCCGCGAAGAGGCCGGTTCAGACAACATCGACAAGGAACGATACCTGCGCGAACAGATGCCCCtt                                                                   <  2:300112/150‑2 (MQ=255)                                                                             ccGGCCTTTTCGCGGGCCCGCTCGCACCCACAGGGGTATCCCAGCCCTCAAGACAGGGCGGTGCTTGTGGGAGCGGGCGGGCCCGGGAAGAGAGGGGATCCGAAAACTACAGCAAGGAACGAAACGTATGCGCGCAGCAGCTCCTCGTCa                                                               >  2:229968/1‑150 (MQ=255)                                                                                      tCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaagaggccggttcaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctcg                                                      >  2:226489‑M2/1‑63 (MQ=255)                                                                                        gcgGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgg                                                                                                                                         <  2:809661‑M2/65‑5 (MQ=255)                                                                                        gcgGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgg                                                                                                                                         >  1:809661‑M2/1‑61 (MQ=255)                                                                                              ccgcccgcACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaagaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagccc                                                             >  1:125105‑M2/1‑55 (MQ=255)                                                                                              ccgcccgcACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaagaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagccc                                                             <  2:125105‑M2/135‑81 (MQ=255)                                                                                              ccgcccgcACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaaaaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctcggcaaactg                                              <  2:729467‑M2/150‑96 (MQ=255)                                                                                                   cgcACCCACCGGGATATCGAGCCCCTGCAGACAGTGGGGTCTTTGTGGGTCTTAGCGTTCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGtt                                         <  2:263917/150‑1 (MQ=255)                                                                                                      aCCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaaaaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctcg                                                      <  1:550102‑M2/134‑88 (MQ=255)                                                                                                      aCCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaaaaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctcg                                                      >  2:550102‑M2/1‑47 (MQ=255)                                                                                                        ccACATGGATATCTGTGCCCTGAAGACAGTGGGGTCCTTGTTGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTtgctgc                                    <  1:229968/150‑1 (MQ=255)                                                                                                        ccACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCttc                                                   <  1:276014/135‑2 (MQ=255)                                                                                                        ccACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTg                                                   >  2:276014/1‑135 (MQ=255)                                                                                                         cacaGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGcc                                   >  2:629208/1‑150 (MQ=255)                                                                                                           caGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGcccc                                 >  1:94866/1‑150 (MQ=255)                                                                                                           caGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGcccc                                 >  2:642236/1‑150 (MQ=255)                                                                                                            aGGGATATCACAGCCCTGAAGACAGTGGGGGCCTTGTGTGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCa                                >  1:1118340/1‑150 (MQ=255)                                                                                                              ggATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAgc                              >  1:37360/1‑150 (MQ=255)                                                                                                                    cacaGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCt                                                                                      <  2:1149488/88‑1 (MQ=255)                                                                                                                    cacaGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCt                                                                                      >  1:1149488/1‑88 (MQ=255)                                                                                                                        gCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTg                    <  2:94866/150‑1 (MQ=255)                                                                                                                         cccTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGt                                                                          <  2:687108/95‑1 (MQ=255)                                                                                                                         cccTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGt                                                                          >  1:687108/1‑95 (MQ=255)                                                                                                                               gagctgTGAGGCCCCTGTGGGTGGGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCCCCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTGGGGTAAt             <  1:132258/145‑1 (MQ=255)                                                                                                                                     tGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTGGGGTAATCACCGt       >  1:372724/1‑150 (MQ=255)                                                                                                                                     tGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTGGGGTAATCACCGt       >  2:911950/1‑150 (MQ=255)                                                                                                                                          tCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTGGGGTAATCACCGTCACCa  >  1:848672/1‑150 (MQ=255)                                                                                                                                            cTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTg                    >  2:597845/1‑130 (MQ=255)                                                                                                                                            cTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTg                    <  1:597845/130‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                            GTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTGGGGTAATCACCGTCACCA  >  NC_002947/2078199‑2078485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.