| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2100003 = | 32 (0.710) | 6 (0.160) | 6/202 | NT | 17.4% | intergenic (‑71/‑134) | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein |
| ? | NC_002947 | 2100098 = | 31 (0.840) | intergenic (‑166/‑39) | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein | |||||
CTTGTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGA > NC_002947/2099855‑2100152 | cttgTATGACAGGCGATTGGTGAACTTGATATCCTTGAGTCGCGAGCCTGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGCCCCCGCTTGgc < 2:197469/150‑1 (MQ=255)ccagtgtggtgccccagtcgatgtgcgggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcgc < 1:138292‑M1/2‑1 (MQ=255)ccagtgtggtgccccagtcgatgtgcgggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcgc < 2:383104‑M1/2‑1 (MQ=255) ttgTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGgc > 2:307159/1‑149 (MQ=255) ttgTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGgc < 1:307159/149‑1 (MQ=255) gTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGcc > 2:275064/1‑150 (MQ=255) gccccagtcgatgtgcgggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCcgc < 2:1033973‑M1/12‑1 (MQ=255) aGGCGATTGGTGAATTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCcgc < 2:594157/150‑1 (MQ=255) gCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCgg < 1:1163683/150‑1 (MQ=255) gCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCgg < 1:60902/150‑1 (MQ=255) gCGATTGGTAAACCTAATAACAATGAGGCCCTAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATGCCGGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCgg < 1:327234/150‑1 (MQ=255) cccagtcgatgtgcgggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCgg > 2:138292‑M1/137‑150 (MQ=255) cagtcgatgtgcgggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGc > 2:700501‑M1/135‑150 (MQ=255) cgatgtgcgggcgttgtgcctgcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGCTTGc > 2:1028372‑M1/131‑150 (MQ=255) tgtgcgggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGCTTGCCCg < 2:903180‑M1/23‑1 (MQ=255) tgcgggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCcgc < 2:321272‑M1/12‑1 (MQ=255) tgcgggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCcgc > 1:321272‑M1/126‑137 (MQ=255) cTTGATAAACATCAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATATAACAATATTCCCGGATTCGGTTCCGTCTGTCTGTAAATTTCAGTTGATCGCCAAGCTGGGTCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTc < 1:275064/150‑1 (MQ=255) cGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATCTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTcc > 2:779382/1‑133 (MQ=255) cGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATCTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTcc < 1:779382/133‑1 (MQ=255) acaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGc < 2:108179‑M1/44‑1 (MQ=255) gTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGc > 2:1172834/1‑150 (MQ=255) ttGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCGGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGcc > 1:578734/1‑150 (MQ=255) gctgcgcAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCtgt < 2:798699/150‑1 (MQ=255) ccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCtgtg > 1:108179‑M1/83‑150 (MQ=255) cgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgcggcGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTgg > 1:760334‑M1/82‑150 (MQ=255) aaGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGGGCg > 1:731572/1‑150 (MQ=255) ggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCgg > 1:273813‑M1/76‑150 (MQ=255) aTAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGccc > 2:654649/1‑78 (MQ=255) aTAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGccc < 1:654649/78‑1 (MQ=255) tAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGGGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAAGGCAAGCCCTGTGGGAGCGGGCac > 1:213865/1‑149 (MQ=255) gCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGc < 1:1172834/150‑1 (MQ=255) cagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCggg > 2:527656‑M1/67‑142 (MQ=255) cagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCggg < 1:527656‑M1/76‑1 (MQ=255) gCCCCGGCTGCTGGTGGGTCCGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAg < 2:578734/150‑1 (MQ=255) gctgctGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGgcgc < 2:731572/150‑1 (MQ=255) tggtggGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGc > 1:428559/1‑150 (MQ=255) gggtggGTCGGGCTGTTCATTGCAGTTGATCGCCATGCGGGGGCCGCTTGGGGCCCCTCCGCGGGGTTGCCCGTTCCCACAGGGACAGCTTTGCCCCAGGCAGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCCGGGGGGCGCGCAGc < 2:483453/149‑1 (MQ=255) tccatgacgactcctaacaatctcagttttttgggggccgcttgGCGCCCCTCcgc > 2:1025136‑M1/45‑56 (MQ=255) tccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCcgc < 1:1025136‑M1/12‑1 (MQ=255) gtctgtTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAggg < 2:930726/131‑1 (MQ=255) gtctgtTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAggg > 1:930726/1‑131 (MQ=255) ttCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAgg < 2:80727/125‑1 (MQ=255) ttCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAgg > 1:80727/1‑125 (MQ=255) cATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAg > 2:675412/1‑122 (MQ=255) cATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAg < 1:675412/122‑1 (MQ=255) aTTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACt > 1:1008024/1‑147 (MQ=255) aTTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACt < 2:1008024/147‑1 (MQ=255) tCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCcgcg < 2:471774/115‑1 (MQ=255) tCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCcgcg > 1:471774/1‑115 (MQ=255) tCAGTGGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGCTCACATAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCTGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGAtt < 2:138707/150‑1 (MQ=39) gggCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGc > 1:157902/1‑113 (MQ=255) gggCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGc < 2:157902/113‑1 (MQ=255) gCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGAcgctc > 1:991885/1‑149 (MQ=255) gCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGAcgctc < 2:991885/149‑1 (MQ=255) ttGGCGCCCCTCCGCGGGCTAGCCCGTTCCTCCAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCCCACAACTCCGATGGTTAGGAGTCGTCATGGAcgctcgct > 2:1063894/1‑150 (MQ=38) GCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGa < 1:593827‑M1/150‑1 (MQ=255) | CTTGTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGA > NC_002947/2099855‑2100152 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |