New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2777246	35 (0.780)	3 (0.070)	3/236	NT	7.6%	coding (302/585 nt)	PP_2429	membrane protein
	?	NC_002947	= 2777267	40 (0.930)					coding (281/585 nt)	PP_2429	membrane protein

AGCGATCAGCAAGAACACCAGCGCCAGCTGCCACACTGGCAACGACGGCGCGGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCGCAGCAGCAGTTCGCCTAGCCCCAGCCCGACGAGCAGCACAA  >  NC_002947/2777101‑2777393                                                                                                                                                  |                                                                                                                                                    agCGATCAGCAACAACACAAGCGCCAGCTTCCTCACTGGCAACGACGGCGCGGCAACTCCCCCGCCCTGCCCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGc                                                                                                                                                 <  1:928008/150‑1 (MQ=255)         gCAAGAACACCAGCGCCAGCTGCCACACTGGCAACGACGGCGCGGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGa                                                                                                                                         >  2:1133280/1‑150 (MQ=255)              aaCACCAGCGCCAGCTGCCACACTGGCAACGACGGCGCGGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCggg                                                                                                                                    <  1:1133280/150‑1 (MQ=255)                   cAGCGCCAGCTGCCACACTGGCAACGACGGCGCGGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCggtgttgg                                                                                                                               <  2:312203/150‑7 (MQ=255)                     gcgcCAGCTGCCACACTGGCAACGACGGCGCGGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGcgg                                                                                                                             >  2:1108599‑M2/1‑147 (MQ=255)                           gCTGCCACACTGGCAACGACGGCGCGGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCCTGGAGCGGGGCGGCGGCACTgc                                                                                                                       <  1:296446/150‑1 (MQ=255)                            cTGCCACACTGGCAACGACGGCGCGGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGccgccccgctccatgcggccacggcacaagg                                                                                                                      <  2:307874‑M1/150‑32 (MQ=255)                              gCCACACTGGCAACGACGGCGCGGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCgca                                                                                                                    <  1:516484/150‑1 (MQ=255)                              gCCACACTGGCAACGACGGCGCGGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCgca                                                                                                                    <  2:578833/150‑1 (MQ=255)                                cacaCTGGCAACGACGGCGCGGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTCTGCCGTGGCCGCATGGAGCCGTGCGGCGGCCCTGCgcagc                                                                                                                  >  2:245976/1‑150 (MQ=255)                                      ggCAACGACGGCGCGGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTc                                                                                                            <  2:348432/150‑1 (MQ=255)                                             acgGCCAGGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGATTCCCCCACGCATTGAATCCGCACTGAGCGCACTTAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCa                                                                                                     <  1:875511/150‑1 (MQ=255)                                                gcgcGGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGgc                                                                                                  <  1:734467/150‑1 (MQ=255)                                                  gcgGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTgg                                                                                                                                                  <  1:61787/100‑1 (MQ=255)                                                  gcgGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTgg                                                                                                                                                  >  2:61787/1‑100 (MQ=255)                                                      cAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCa                                                                                            <  2:386548/150‑1 (MQ=255)                                                         aTACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGcc                                                                                         <  1:158093/150‑1 (MQ=255)                                                                   caccGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCAcccc                                                                               >  1:869581/1‑150 (MQ=255)                                                                        ccACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGccgccccgctccatgcggccacgg                                                                                                                             <  1:960792‑M1/99‑25 (MQ=255)                                                                        ccACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGccgccccgctccatgcggccacgg                                                                                                                             >  2:960792‑M1/1‑75 (MQ=255)                                                                        ccACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGccc                                                                          >  1:185967/1‑150 (MQ=255)                                                                                    aCCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCTGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCt                                                              >  1:8575/1‑150 (MQ=255)                                                                                    aCCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCt                                                              >  1:357307/1‑150 (MQ=255)                                                                                       aGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCTGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGtt                                                           <  2:8575/150‑1 (MQ=255)                                                                                               gggTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAgg                                                   <  1:496243/150‑1 (MQ=255)                                                                                                 gTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAgggg                                                 <  1:718321/150‑1 (MQ=255)                                                                                                    caccacCTTCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCgcagca                                                                                                                 <  1:79257/83‑1 (MQ=255)                                                                                                    caccacCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCgcagca                                                                                                                 >  2:79257/1‑83 (MQ=255)                                                                                                      ccaccTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAg                                                    >  2:1053172/1‑142 (MQ=255)                                                                                                      ccaccTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAgc                                            <  2:1170357/150‑1 (MQ=255)                                                                                                      ccaccTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGAACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAg                                                    <  1:1053172/142‑1 (MQ=255)                                                                                                       caccTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGTAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAgcg                                           >  2:471477/1‑150 (MQ=255)                                                                                                           tGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCgcagc                                       <  2:299244/150‑1 (MQ=255)                                                                                                            gCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCgcagca                                      <  2:357307/150‑1 (MQ=255)                                                                                                            gCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCgcagca                                      <  1:212552/150‑1 (MQ=255)                                                                                                                cGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCGcagcagcag                                  <  2:182097/150‑1 (MQ=255)                                                                                                                      cGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCGCAGCAGCAGTTCGcc                            <  2:535047/150‑1 (MQ=255)                                                                                                                      cGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCGCAGCAGCAGTTCGcc                            <  2:1107056/150‑1 (MQ=255)                                                                                                                         aCTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGc                                                                                                                                       >  1:984944/1‑40 (MQ=255)                                                                                                                         aCTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGc                                                                                                                                       <  2:984944/40‑1 (MQ=255)                                                                                                                                      aaGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCGCAGCAGCAGTTCGCCTAGCCCCAGCCcgacg            >  2:343817/1‑150 (MQ=255)                                                                                                                                      aaGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCGCAGCAGCAGTTCGCCTAGCCCCAGCCcgacg            >  2:174674/1‑150 (MQ=255)                                                                                                                                         ccTTGTGCCGTGGCCGCATGGAGCGGGGCGGcggcacaaggcttcagtgcgctcagtgcggcctcgttgcaggtggtgaaccccaaggtctggttgatggccgtggcggtggtcggggtatttgccgcgccgtcgttgccagtgtggcag         <  2:307874‑M2/150‑120 (MQ=255)                                                                                                                                                ccgccgccccgctccatgcggccacggcacaaggcttcagtgcgctcagtgcggcctcgttgcaggtggtgaaccccaaggtctggttgatggccgtggcggtggtcggggtatttgccgcgccgtcgttgccagtgtggcagctggcgc  >  2:1108599‑M1/1‑3 (MQ=255)                                                                                                                                                ccGTGGCCGCATGGAGCGGGGCGGcggcacaaggcttcagtgcgctcagtgcggcctcgttgcaggtggtgaaccccaaggtctggttgatggccgtgg                                                     <  1:960792‑M2/99‑76 (MQ=255)                                                                                                                                                ccGTGGCCGCATGGAGCGGGGCGGcggcacaaggcttcagtgcgctcagtgcggcctcgttgcaggtggtgaaccccaaggtctggttgatggccgtgg                                                     >  2:960792‑M2/1‑24 (MQ=255)                                                                                                                                                  |                                                                                                                                                    AGCGATCAGCAAGAACACCAGCGCCAGCTGCCACACTGGCAACGACGGCGCGGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCGCAGCAGCAGTTCGCCTAGCCCCAGCCCGACGAGCAGCACAA  >  NC_002947/2777101‑2777393

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.