New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2777246	35 (0.780)	3 (0.070)	3/236	NT	7.6%	coding (302/585 nt)	PP_2429	membrane protein
	?	NC_002947	= 2777267	40 (0.930)					coding (281/585 nt)	PP_2429	membrane protein

GCGCCAGCTGCCACACTGGCAACGACGGCGCGGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCGCAGCAGCAGTTCGCCTAGCCCCAGCCCGACGAGCAGCACAATGGCTGCAGCCGCGCCACACGCC  >  NC_002947/2777121‑2777416                                                                                                                                                   |                                                                                                                                                      gcgcCAGCTGCCACACTGGCAACGACGGCGCGGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGcgg                                                                                                                                                    >  2:1108599‑M2/1‑147 (MQ=255)       gCTGCCACACTGGCAACGACGGCGCGGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCCTGGAGCGGGGCGGCGGCACTgc                                                                                                                                              <  1:296446/150‑1 (MQ=255)          gCCACACTGGCAACGACGGCGCGGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCgca                                                                                                                                           <  1:516484/150‑1 (MQ=255)          gCCACACTGGCAACGACGGCGCGGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCgca                                                                                                                                           <  2:578833/150‑1 (MQ=255)            cacaCTGGCAACGACGGCGCGGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTCTGCCGTGGCCGCATGGAGCCGTGCGGCGGCCCTGCgcagc                                                                                                                                         >  2:245976/1‑150 (MQ=255)                  ggCAACGACGGCGCGGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTc                                                                                                                                   <  2:348432/150‑1 (MQ=255)                         acgGCCAGGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGATTCCCCCACGCATTGAATCCGCACTGAGCGCACTTAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCa                                                                                                                            <  1:875511/150‑1 (MQ=255)                            gcgcGGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGgc                                                                                                                         <  1:734467/150‑1 (MQ=255)                                  cAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCa                                                                                                                   <  2:386548/150‑1 (MQ=255)                                     aTACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGcc                                                                                                                <  1:158093/150‑1 (MQ=255)                                               caccGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCAcccc                                                                                                      >  1:869581/1‑150 (MQ=255)                                                    ccACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGccc                                                                                                 >  1:185967/1‑150 (MQ=255)                                                                aCCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCTGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCt                                                                                     >  1:8575/1‑150 (MQ=255)                                                                aCCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCt                                                                                     >  1:357307/1‑150 (MQ=255)                                                                   aGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCTGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGtt                                                                                  <  2:8575/150‑1 (MQ=255)                                                                           gggTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAgg                                                                          <  1:496243/150‑1 (MQ=255)                                                                             gTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAgggg                                                                        <  1:718321/150‑1 (MQ=255)                                                                                caccacCTTCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCgcagca                                                                                                                                        <  1:79257/83‑1 (MQ=255)                                                                                caccacCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCgcagca                                                                                                                                        >  2:79257/1‑83 (MQ=255)                                                                                  ccaccTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAg                                                                           >  2:1053172/1‑142 (MQ=255)                                                                                  ccaccTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAgc                                                                   <  2:1170357/150‑1 (MQ=255)                                                                                  ccaccTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGAACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAg                                                                           <  1:1053172/142‑1 (MQ=255)                                                                                   caccTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGTAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAgcg                                                                  >  2:471477/1‑150 (MQ=255)                                                                                       tGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCgcagc                                                              <  2:299244/150‑1 (MQ=255)                                                                                        gCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCgcagca                                                             <  2:357307/150‑1 (MQ=255)                                                                                        gCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCgcagca                                                             <  1:212552/150‑1 (MQ=255)                                                                                            cGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCGcagcagcag                                                         <  2:182097/150‑1 (MQ=255)                                                                                                  cGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCGCAGCAGCAGTTCGcc                                                   <  2:1107056/150‑1 (MQ=255)                                                                                                  cGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCGCAGCAGCAGTTCGcc                                                   <  2:535047/150‑1 (MQ=255)                                                                                                                  aaGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCGCAGCAGCAGTTCGCCTAGCCCCAGCCcgacg                                   >  2:343817/1‑150 (MQ=255)                                                                                                                  aaGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCGCAGCAGCAGTTCGCCTAGCCCCAGCCcgacg                                   >  2:174674/1‑150 (MQ=255)                                                                                                                     ccTTGTGCCGTGGCCGCATGGAGCGGGGCGGcggcacaaggcttcagtgcgctcagtgcggcctcgttgcaggtggtgaaccccaaggtctggttgatggccgtggcggtggtcggggtatttgccgcgccgtcgttgccagtgtggcag                                <  2:307874‑M2/150‑120 (MQ=255)                                                                                                                            ccGTGGCCGCATGGAGCGGGGCGGcggcacaaggcttcagtgcgctcagtgcggcctcgttgcaggtggtgaaccccaaggtctggttgatggccgtgg                                                                            >  2:960792‑M2/1‑24 (MQ=255)                                                                                                                            ccGTGGCCGCATGGAGCGGGGCGGcggcacaaggcttcagtgcgctcagtgcggcctcgttgcaggtggtgaaccccaaggtctggttgatggccgtgg                                                                            <  1:960792‑M2/99‑76 (MQ=255)                                                                                                                                  ccGCATGGCGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCGCAGCAGCAGTTCGCCTAGCCCCAGCCCGACGAGCAGCACAATGGCTg                   >  2:299468/1‑150 (MQ=255)                                                                                                                                  ccGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCGCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCGCAGCAGCAGTTCGCCTAGCCCTAGCCCGACGAGCAGCACAATGGCTg                   >  1:1179046/1‑150 (MQ=255)                                                                                                                                   cGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGt                                                                      <  1:621461/98‑1 (MQ=255)                                                                                                                                   cGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGt                                                                      >  2:621461/1‑98 (MQ=255)                                                                                                                                    gCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAgg                                                                          <  2:1049152/93‑1 (MQ=255)                                                                                                                                    gCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAgg                                                                          >  1:1049152/1‑93 (MQ=255)                                                                                                                                    gCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCGCAGCAGCAGTTCGCCTAGCCCCAGCCCGACGAGCAGCACAATGGCTGCa                 >  1:97259/1‑150 (MQ=255)                                                                                                                                    gCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCGCAGCAGCAGTTCGCCTAGCCCCAGCCCGACGAGCAGCACAATGGCTGCa                 >  1:502221/1‑150 (MQ=255)                                                                                                                                      aTGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCGCAGCAGCAGTTCGCCTAGCCCCAGCCCGACGagcag                              <  1:728424/135‑1 (MQ=255)                                                                                                                                      aTGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCGCAGCAGCAGTTCGCCTAGCCCCAGCCCGACGagcag                              >  2:728424/1‑135 (MQ=255)                                                                                                                                              gggCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGGGCGATACGGCAGCGCAGCAGCAGTGCGCCTAGACCTAGCCCGAAGAGGAGCACAATGGCTGCAGCCGCGCcac       >  1:327479/1‑150 (MQ=255)                                                                                                                                                   gcggcACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGGGCAGCAGCAGTTCGCCTAGCCCCAGCCCGCCGAGCAGCACAATGGCTGCAGCCGCGCCACAcgcc  >  1:321321/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                      GCGCCAGCTGCCACACTGGCAACGACGGCGCGGCAAATACCCCGACCACCGCCACGGCCATCAACCAGACCTTGGGGTTCACCACCTGCAACGAGGCCGCACTGAGCGCACTGAAGCCTTGTGCCGTGGCCGCATGGAGCGGGGCGGCGGCACTGCGCAGCATCTTCCACGCCAGGCTGCTCAGCCACAGCACCCCGGCCCAGCTCATCAGCTGTTGCGCCAGGGGGTAGCGCAGCAGCAGTTCGCCTAGCCCCAGCCCGACGAGCAGCACAATGGCTGCAGCCGCGCCACACGCC  >  NC_002947/2777121‑2777416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.