New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2784719 =	45 (1.000)	3 (0.070)	3/240	NT	6.3%	coding (1129/1245 nt)	PP_2437	acyl‑CoA dehydrogenase
	?	NC_002947	2784745 =	45 (1.030)					coding (1155/1245 nt)	PP_2437	acyl‑CoA dehydrogenase

GGACACCGTCGGCAACAAGGTGGCCCGTAGCGAGATCGCCCAGATCAAGGTGGTGGCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGAACGCGTCAGCCTGCGCCGGCCCATTCGC  >  NC_002947/2784571‑2784863                                                                                                                                                     |                                                                                                                                                 gcgcaatcactgcaggcgcgggtttgatcgcgaatgggccggcgcaggctgacgcgttcaccgcccgctacgcaacatctccaccggcacatacttgccaatctcgtatttgccaatcgccgcccggtgcacttcatccggcccgtcaGc                                                                                                                                                 >  2:657387‑M1/149‑150 (MQ=255)   gcaatcactgcaggcgcgggtttgatcgcgaatgggccggcgcaggctgacgcgttcaccgcccgctacgcaacatctccaccggcacatacttgccaatctcgtatttgccaatcgccgcccggtgcacttcatccggcccgtcaGCCa                                                                                                                                               <  1:77549‑M1/4‑1 (MQ=255)       cGTCGGCAACAAGGTGGCCCGTAGCGAGATCGCCCAGATCAAGGTGGTGGCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGcg                                                                                                                                           <  1:1050550/150‑2 (MQ=255)                    gTGGCCCGTAGCGAGATCGCCCAGATCAAGGTGGTGGCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTgcgc                                                                                                                              <  1:409897/150‑1 (MQ=255)                       gCCCGTAGCGAGATCGCCCAGATCAAGGTGGTGGCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTg                                                                                                                           >  2:100305/1‑150 (MQ=255)                           gTAGCGAGATCGCCCAGATCAAGGTGGTGGCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTg                                                                                                                       >  2:640631/1‑150 (MQ=255)                                    tCGCCCAGATCAAGGTGGTGGCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCgg                                                                                                              >  1:679788/1‑150 (MQ=255)                                        ccAGATCAAGGTGGTGGCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTTGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGa                                                                                                          >  2:1172179/1‑150 (MQ=255)                                        ccAGATCAAGGTGGTGGCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGa                                                                                                          >  1:196777/1‑150 (MQ=255)                                          gcgcaggctgacgcgttcaccgcccgctacgcaacacctccaccggcacatacttgccaatctcgtatttgccaatcgccgccctgtgcacttcatccggcccgtcaGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAg                                                                                                        >  2:438083‑M1/108‑150 (MQ=255)                                            aTCAAGGTGGTGGCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTg                                                                                                      >  2:413258/1‑150 (MQ=255)                                                aGGTGGTGGCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGcccc                                                                                                  <  1:995505/150‑1 (MQ=255)                                                aGGGGGTGGCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCAcc                                                                                                  >  2:903617/1‑150 (MQ=255)                                                      tggCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAg                                                                                                        >  1:775913/1‑138 (MQ=255)                                                      tggCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAg                                                                                                        <  2:775913/138‑1 (MQ=255)                                                      tggCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGggcgg                                                                                            <  1:640631/150‑1 (MQ=255)                                                          gcCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGAt                                                                                        >  2:785333/1‑150 (MQ=255)                                                            cGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTg                                                                                      <  2:1160157/150‑1 (MQ=255)                                                                   ggCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATa                                                                               <  1:413258/150‑1 (MQ=255)                                                                           aCGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTg                                                                       >  1:729522/1‑150 (MQ=255)                                                                              tGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCa                                                                    >  1:723279/1‑150 (MQ=255)                                                                                    aCCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGAtt                                                                                       >  1:550312/1‑125 (MQ=255)                                                                                    aCCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGAtt                                                                                       <  2:550312/125‑1 (MQ=255)                                                                                      cGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTAtgtg                                                            >  1:524059/1‑150 (MQ=255)                                                                                       gggCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGc                                                           <  2:729522/150‑1 (MQ=255)                                                                                        ggCTATCCAGATACATGGTGGGGCAGGGGTAATCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGcc                                                          <  1:423567/150‑1 (MQ=255)                                                                                        ggCTATCCAGATACATGGTGGGGCAAGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGttgggtcc                                                          >  2:688396/1‑143 (MQ=255)                                                                                           tATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGt                                                       >  2:473805/1‑150 (MQ=255)                                                                                           atacttgccaatctcgtatttgccaatcgccgcccggtgcacttcatccggcccgtcaGCCATGCAGCGCACCCTGCGCCTGGCTGa                                                                                                                      <  1:355762‑M1/29‑1 (MQ=255)                                                                                           atacttgccaatctcgtatttgccaatcgccgcccggtgcacttcatccggcccgtcaGCCATGCAGCGCACCCTGCGCCTGGCTGa                                                                                                                      >  2:355762‑M1/59‑87 (MQ=255)                                                                                            aTCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTg                                                      <  2:990657/150‑1 (MQ=255)                                                                                                aGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGTCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGgaga                                                  >  2:1136984/1‑150 (MQ=255)                                                                                                      aTGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGaa                                                                                                         <  1:1057226/89‑1 (MQ=255)                                                                                                      aTGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGaa                                                                                                         >  2:1057226/1‑89 (MQ=255)                                                                                                                aagggTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGAATTAGTCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAgcgggcg                                  <  1:688396/148‑1 (MQ=255)                                                                                                                aGGGGTAAGCGGCGATTTCCCGCTTGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAgcgggcg                                  <  1:1172179/150‑1 (MQ=255)                                                                                                                 ggggTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAgcgggcgg                                 <  2:723279/150‑1 (MQ=255)                                                                                                                  gggTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGt                                >  2:465326/1‑150 (MQ=255)                                                                                                                     tAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGaa                             <  2:196777/150‑1 (MQ=255)                                                                                                                     tAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGaa                             <  2:679788/150‑1 (MQ=255)                                                                                                                     tAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGaa                             <  1:473805/150‑1 (MQ=255)                                                                                                                         cggcgATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGAAcgcg                         >  1:618978/1‑150 (MQ=255)                                                                                                                               tttCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGAACGCGTCAGcc                   >  2:123604/1‑150 (MQ=255)                                                                                                                                     gCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATATTGCGTAGCGGGCGGTGAACGCGTCAGCCTGCGcc             >  1:1182518/1‑150 (MQ=255)                                                                                                                                      cTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGAACGCGTCAGCCTGCGCCg            >  2:135628/1‑150 (MQ=255)                                                                                                                                           cTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCa                                                                                   >  1:953372/1‑74 (MQ=255)                                                                                                                                           cTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCa                                                                                   <  2:953372/74‑1 (MQ=255)                                                                                                                                           cTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGAACGCGTCAGCCTGCGCCGGCCCa       >  2:1181380/1‑150 (MQ=255)                                                                                                                                           cTACAAGTGTGCCACGAAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGAACGCGTCAGCCTGCGCCGGCCCa       >  2:356343/1‑150 (MQ=255)                                                                                                                                            tACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGAACGCGTCAGCCTGCGCCGGCCCAt      >  2:701568/1‑150 (MQ=255)                                                                                                                                                tGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGAACGCGTCAGCCTGCGCCGGCCCATTcgc  <  1:1008770/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                 GGACACCGTCGGCAACAAGGTGGCCCGTAGCGAGATCGCCCAGATCAAGGTGGTGGCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGAACGCGTCAGCCTGCGCCGGCCCATTCGC  >  NC_002947/2784571‑2784863

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.