New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2784719 =	45 (1.000)	3 (0.070)	3/240	NT	6.3%	coding (1129/1245 nt)	PP_2437	acyl‑CoA dehydrogenase
	?	NC_002947	2784745 =	45 (1.030)					coding (1155/1245 nt)	PP_2437	acyl‑CoA dehydrogenase

GTAGCGAGATCGCCCAGATCAAGGTGGTGGCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGAACGCGTCAGCCTGCGCCGGCCCATTCGCGATCAAACCCGCGCCTGCAGTGATTGCGCAA  >  NC_002947/2784597‑2784894                                                                                                                                                     |                                                                                                                                                      gTAGCGAGATCGCCCAGATCAAGGTGGTGGCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTg                                                                                                                                                      >  2:640631/1‑150 (MQ=255)          tCGCCCAGATCAAGGTGGTGGCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCgg                                                                                                                                             >  1:679788/1‑150 (MQ=255)              ccAGATCAAGGTGGTGGCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTTGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGa                                                                                                                                         >  2:1172179/1‑150 (MQ=255)              ccAGATCAAGGTGGTGGCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGa                                                                                                                                         >  1:196777/1‑150 (MQ=255)                gcgcaggctgacgcgttcaccgcccgctacgcaacacctccaccggcacatacttgccaatctcgtatttgccaatcgccgccctgtgcacttcatccggcccgtcaGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAg                                                                                                                                       >  2:438083‑M1/108‑150 (MQ=255)                  aTCAAGGTGGTGGCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTg                                                                                                                                     >  2:413258/1‑150 (MQ=255)                      aGGTGGTGGCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGcccc                                                                                                                                 <  1:995505/150‑1 (MQ=255)                      aGGGGGTGGCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCAcc                                                                                                                                 >  2:903617/1‑150 (MQ=255)                            tggCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAg                                                                                                                                       <  2:775913/138‑1 (MQ=255)                            tggCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAg                                                                                                                                       >  1:775913/1‑138 (MQ=255)                            tggCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGggcgg                                                                                                                           <  1:640631/150‑1 (MQ=255)                                gcCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGAt                                                                                                                       >  2:785333/1‑150 (MQ=255)                                  cGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTg                                                                                                                     <  2:1160157/150‑1 (MQ=255)                                         ggCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATa                                                                                                              <  1:413258/150‑1 (MQ=255)                                                 aCGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTg                                                                                                      >  1:729522/1‑150 (MQ=255)                                                    tGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCa                                                                                                   >  1:723279/1‑150 (MQ=255)                                                          aCCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGAtt                                                                                                                      <  2:550312/125‑1 (MQ=255)                                                          aCCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGAtt                                                                                                                      >  1:550312/1‑125 (MQ=255)                                                            cGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTAtgtg                                                                                           >  1:524059/1‑150 (MQ=255)                                                             gggCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGc                                                                                          <  2:729522/150‑1 (MQ=255)                                                              ggCTATCCAGATACATGGTGGGGCAGGGGTAATCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGcc                                                                                         <  1:423567/150‑1 (MQ=255)                                                              ggCTATCCAGATACATGGTGGGGCAAGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGttgggtcc                                                                                         >  2:688396/1‑143 (MQ=255)                                                                 tATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGt                                                                                      >  2:473805/1‑150 (MQ=255)                                                                 atacttgccaatctcgtatttgccaatcgccgcccggtgcacttcatccggcccgtcaGCCATGCAGCGCACCCTGCGCCTGGCTGa                                                                                                                                                     >  2:355762‑M1/59‑87 (MQ=255)                                                                 atacttgccaatctcgtatttgccaatcgccgcccggtgcacttcatccggcccgtcaGCCATGCAGCGCACCCTGCGCCTGGCTGa                                                                                                                                                     <  1:355762‑M1/29‑1 (MQ=255)                                                                  aTCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTg                                                                                     <  2:990657/150‑1 (MQ=255)                                                                      aGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGTCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGgaga                                                                                 >  2:1136984/1‑150 (MQ=255)                                                                            aTGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGaa                                                                                                                                        >  2:1057226/1‑89 (MQ=255)                                                                            aTGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGaa                                                                                                                                        <  1:1057226/89‑1 (MQ=255)                                                                                      aagggTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGAATTAGTCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAgcgggcg                                                                 <  1:688396/148‑1 (MQ=255)                                                                                      aGGGGTAAGCGGCGATTTCCCGCTTGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAgcgggcg                                                                 <  1:1172179/150‑1 (MQ=255)                                                                                       ggggTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAgcgggcgg                                                                <  2:723279/150‑1 (MQ=255)                                                                                        gggTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGt                                                               >  2:465326/1‑150 (MQ=255)                                                                                           tAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGaa                                                            <  2:679788/150‑1 (MQ=255)                                                                                           tAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGaa                                                            <  2:196777/150‑1 (MQ=255)                                                                                           tAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGaa                                                            <  1:473805/150‑1 (MQ=255)                                                                                               cggcgATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGAAcgcg                                                        >  1:618978/1‑150 (MQ=255)                                                                                                     tttCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGAACGCGTCAGcc                                                  >  2:123604/1‑150 (MQ=255)                                                                                                          cttcatccggcccgtcagccaggcgcagggtgcgctgcatggcTGACGGGCCGGATGAAGTGCACAGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGGTGTTGCGTAGCGGGCGGTGAACGCGTCAGCCTgcgc                                             >  2:438083‑M2/44‑150 (MQ=255)                                                                                                           gCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATATTGCGTAGCGGGCGGTGAACGCGTCAGCCTGCGcc                                            >  1:1182518/1‑150 (MQ=255)                                                                                                            cTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGAACGCGTCAGCCTGCGCCg                                           >  2:135628/1‑150 (MQ=255)                                                                                                                 cTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCa                                                                                                                  <  2:953372/74‑1 (MQ=255)                                                                                                                 cTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCa                                                                                                                  >  1:953372/1‑74 (MQ=255)                                                                                                                 cTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGAACGCGTCAGCCTGCGCCGGCCCa                                      >  2:1181380/1‑150 (MQ=255)                                                                                                                 cTACAAGTGTGCCACGAAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGAACGCGTCAGCCTGCGCCGGCCCa                                      >  2:356343/1‑150 (MQ=255)                                                                                                                  tACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGAACGCGTCAGCCTGCGCCGGCCCAt                                     >  2:701568/1‑150 (MQ=255)                                                                                                                      tGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGAACGCGTCAGCCTGCGCCGGCCCATTcgc                                 <  1:1008770/150‑1 (MQ=255)                                                                                                                        tcagccaggcgcagggtgcgctgcatggcTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTAt                                                                                              <  1:355762‑M2/58‑1 (MQ=255)                                                                                                                        tcagccaggcgcagggtgcgctgcatggcTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTAt                                                                                              >  2:355762‑M2/30‑87 (MQ=255)                                                                                                                               tGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGAACGCGTCAGCCTGCGCCGGCCCATTCGCGATCAAAcc                        <  1:100305/150‑1 (MQ=255)                                                                                                                                         ccTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGAACGCGTCAGCCTGCGCCGGCCCATTCGCGATCAAACCCGCGCCTGCa              >  2:77549/1‑150 (MQ=255)                                                                                                                                         ccTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGAACGCGTCAGCCTGCGCCGGCCCATTCGCGATCAAACCCGCGCCTGCa              <  1:903617/150‑1 (MQ=255)                                                                                                                                              gcCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGCGGAGATGTTGCGTAGCGGGCGGTGAACGCGTCAGCCTCACGCGGCCCATTCGCGATCAAACCCGCGCCTGCAGTGAt         >  1:969583/1‑150 (MQ=255)                                                                                                                                                 tggcTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGAACGCGTCAGCCTGCGCCGGCCCATTCGCGATCAAACCCGCGCCTGCAGTGATTgc      <  1:77549‑M2/146‑1 (MQ=255)                                                                                                                                                   gcTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGAACGCGTCAGCCTGCGCCGGCCCATTCGCGATCAAACCCGCGCCTGCAGTGATTgcgc    >  2:657387‑M2/3‑150 (MQ=255)                                                                                                                                                     tGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGAACGCGTCAGCCTGCGCCGGCCCATTCGCGATCAAACCCGCGCCTGCAGTGATTGCGCaa  >  2:930178/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                      GTAGCGAGATCGCCCAGATCAAGGTGGTGGCGCCGAACGTGGCCTTGAACGTGATCGACCGGGCTATCCAGATACATGGTGGGGCAGGGGTAAGCGGCGATTTCCCGCTGGCCTACATGTATGCCATGCAGCGCACCCTGCGCCTGGCTGACGGGCCGGATGAAGTGCACCGGGCGGCGATTGGCAAATACGAGATTGGCAAGTATGTGCCGGTGGAGATGTTGCGTAGCGGGCGGTGAACGCGTCAGCCTGCGCCGGCCCATTCGCGATCAAACCCGCGCCTGCAGTGATTGCGCAA  >  NC_002947/2784597‑2784894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.