New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3588138	43 (0.950)	5 (0.120)	4/238	NT	11.7%	intergenic (+16/‑59)	catA‑II/benE‑II	catechol 1,2‑dioxygenase/benzoate transport protein
	?	NC_002947	= 3588208	34 (0.790)					coding (12/1272 nt)	benE‑II	benzoate transport protein

AAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAA  >  NC_002947/3588010‑3588285                                                                                                                                 |                                                                                                                                                    atgggCCGGATGGGCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCa                                                                                                                                          >  2:924189/3‑140 (MQ=255) aaGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGGTGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCGCGCTca                                                                                                                                >  1:465406/1‑149 (MQ=255) aaGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCa                                                                                                                                          <  1:924189/140‑1 (MQ=255)     gCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCTGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCTCGGGGCCTTATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCcaca                                                                                                                            <  1:1123905/150‑1 (MQ=255)      ccGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAg                                                                                                                           >  2:271047/1‑150 (MQ=255)         gATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTg                                                                                                                        >  1:451056/1‑150 (MQ=255)             gTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGc                                                                                                                    <  1:471843/150‑1 (MQ=255)             gTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGc                                                                                                                    <  2:1139483/150‑1 (MQ=255)              tCGGCATGCCGAGCCGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGcc                                                                                                                   >  2:299374/1‑150 (MQ=255)                 gCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCtgt                                                                                                                >  1:1069569/1‑150 (MQ=255)                   aTGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGc                                                                                                              <  1:155946/150‑1 (MQ=255)                       cGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTc                                                                                                          >  1:1089487/1‑150 (MQ=255)                             gAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCgttgtt                                                                                                    <  1:815598/150‑1 (MQ=255)                              aaGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGttgttg                                                                                                   <  1:925193/150‑1 (MQ=255)                              aaGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGttgttg                                                                                                   <  2:256234/150‑1 (MQ=255)                                gTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTc                                                                                                          >  2:589451/1‑141 (MQ=255)                                gTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTc                                                                                                          <  1:589451/141‑1 (MQ=255)                                 ttCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCTGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTc                                                                                                                                                 >  2:639683/1‑101 (MQ=255)                                 ttCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCTGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTc                                                                                                                                                 <  1:639683/101‑1 (MQ=255)                                 ttCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCa                                                                                                             <  1:473167/137‑1 (MQ=255)                                 ttCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCa                                                                                                             >  2:473167/1‑137 (MQ=255)                                    gACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCgg                                                                                             <  1:299374/150‑1 (MQ=255)                                     aCTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCGCCGAGTGGGCTGcttcgcgggcatgcccgctccaacaacgactgcacaggcttcacctgtgggagcggg                                                                                            <  1:892341‑M1/150‑58 (MQ=255)                                     aCTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGtttcgcgggcatgcccgctccaacaacgactgcacaggcttcacctgtgggagcggg                                                                                            <  1:1128925‑M1/150‑58 (MQ=255)                                      cTTCCAGTTGCAGCAGGCGCAGGGCGGTTCCGGTGAGCCGCTCAGCGTGCGGCCGCGAGCTTTGCAGGAGCCCTGATCCACCGATTGGGCTGtttcgcgggcatgcccgctccaacaacgactgcacaggcttcacctgtgggagcgggc                                                                                           <  2:330532‑M1/150‑59 (MQ=255)                                        tCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCAt                                                                                         <  2:451056/150‑1 (MQ=255)                                        tCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCAt                                                                                         <  2:1069569/150‑1 (MQ=255)                                        tCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCAt                                                                                         <  1:271047/150‑1 (MQ=255)                                          cAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGt                                                                                                                         <  2:247749/116‑1 (MQ=255)                                          cAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGt                                                                                                                         >  1:247749/1‑116 (MQ=255)                                                  gcagGCCCAGGGCGGTGCGGATGAGCAGCGGAGCGGGCGGCCGCGCGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCACTCGTTGTTGGAGCGGGCATGCCTGCGAag                                                                               <  2:74277/150‑1 (MQ=255)                                                     ggCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGcag                                                                            >  2:1089487‑M2/1‑147 (MQ=255)                                                                 tGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCaaa                                                                <  1:734959/150‑1 (MQ=255)                                                                  gCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGcttcgcgggcatgcccgctccaacaacgactgcacaggcttcacctgtgggagcgggcatgcccgcgaaacagcccactcggtg                                                                 >  2:714995‑M1/1‑64 (MQ=255)                                                                  gCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGcttcgcgggcatgcccgctccaacaacgactgcacaggcttcacctgtgggagcgggcatgcccgcgaaacagcccactcggtg                                                                 <  1:714995‑M1/148‑85 (MQ=255)                                                                     gATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGGGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTGGTTAGAGCGGGCATGCCCGCCAAGCAGCCAACACCCAAACAag                                                            >  2:437698/1‑150 (MQ=255)                                                                            agcgcagcgGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAACAGCCCGc                                                     >  1:1082045/1‑150 (MQ=255)                                                                              cgcagcgGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCca                                                   >  2:551625/1‑150 (MQ=255)                                                                                           cgcgAGCTTTGCAGGAGGCCTGATCCACCGAGGGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGCGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAACCCGCCACAAAggccggcag                                      >  1:419031/1‑148 (MQ=255)                                                                                                 cTTTGCAGGAGGCCTGATCCACCGATTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCt                                <  1:165774/150‑1 (MQ=255)                                                                                                  tttGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCtt                               >  1:753408/1‑150 (MQ=255)                                                                                                              cTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCtgtg                                                                                                               >  2:1200215/1‑58 (MQ=255)                                                                                                              cTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCtgtg                                                                                                               <  1:1200215/58‑1 (MQ=255)                                                                                                                gATCCACCGAGTGGGCTGTTGCGCGGGCAGGCGCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGGAGCTTCAt                 >  2:980829/1‑150 (MQ=255)                                                                                                                 aTCCACCGAGTGGGCTGTTTCTCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATg                >  1:1163721/1‑150 (MQ=255)                                                                                                                   ccACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCgttgtt                                                                                                    >  1:905144/1‑64 (MQ=255)                                                                                                                   ccACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCgttgtt                                                                                                    <  2:905144/64‑1 (MQ=255)                                                                                                                    cACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGcagcccactcggtggatcaggcctcctgcaaagctcgcggccgcccgctgcgctgctcatcggc               <  1:714995‑M2/148‑65 (MQ=255)                                                                                                                    cACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGcagcccactcggtggatcaggcctcctgcaaagctcgcggccgcccgctgcgctgctcatcggc               >  2:714995‑M2/1‑84 (MQ=255)                                                                                                                     aCCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCAAACAAAAACCGTGCATCCGGCTGTTGTTGGAGCGGGGATGTCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGaaaa            >  1:510712/1‑150 (MQ=255)                                                                                                                          gttagCTGTTTCGCGTGCATCTCCAATTACACATGTGAAGCCTGTGCAGTCCTTGTTGGAACGATCACGCCCGCTAAGCAGCCAACACCCAAACAACAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTg       <  2:465406/146‑1 (MQ=255)                                                                                                                          gTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCa                  <  1:334438/139‑1 (MQ=255)                                                                                                                          gTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCa                  >  2:334438/1‑139 (MQ=255)                                                                                                                            gggCTGTTTCGCGGGCCTGCTCGCTCCCACAGGTGAAGCCTGTGCAGTCGTCGTTGTAGCGGGGATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCACCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGAt     <  1:437698/150‑1 (MQ=255)                                                                                                                               ctgcttcgcgggcatgcccgctccaacaacgactgcacaggcttcacctgtgggagcgggcatgcccgcgaaacagcccactcggtggatcaggcctcctgcaaagctcgcggccgcccgctgcgctgctcatcggcaccgccctgggcc  >  2:1089487‑M1/1‑3 (MQ=255)                                                                                                                                 |                                                                                                                                                    AAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAA  >  NC_002947/3588010‑3588285

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.