New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3588138	43 (0.950)	5 (0.120)	4/238	NT	11.7%	intergenic (+16/‑59)	catA‑II/benE‑II	catechol 1,2‑dioxygenase/benzoate transport protein
	?	NC_002947	= 3588208	34 (0.790)					coding (12/1272 nt)	benE‑II	benzoate transport protein

GCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCGGCAGCATTGCCACGACGATCTCCTACGCCGGCCCGTTG  >  NC_002947/3588059‑3588352                                                                                                                                                      |                                                                                                                                                 gcagGCCCAGGGCGGTGCGGATGAGCAGCGGAGCGGGCGGCCGCGCGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCACTCGTTGTTGGAGCGGGCATGCCTGCGAag                                                                                                                                                  <  2:74277/150‑1 (MQ=255)    ggCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGcag                                                                                                                                               >  2:1089487‑M2/1‑147 (MQ=255)                tGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCaaa                                                                                                                                   <  1:734959/150‑1 (MQ=255)                    gATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGGGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTGGTTAGAGCGGGCATGCCCGCCAAGCAGCCAACACCCAAACAag                                                                                                                               >  2:437698/1‑150 (MQ=255)                           agcgcagcgGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAACAGCCCGc                                                                                                                        >  1:1082045/1‑150 (MQ=255)                             cgcagcgGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCca                                                                                                                      >  2:551625/1‑150 (MQ=255)                                          cgcgAGCTTTGCAGGAGGCCTGATCCACCGAGGGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGCGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAACCCGCCACAAAggccggcag                                                                                                         >  1:419031/1‑148 (MQ=255)                                                cTTTGCAGGAGGCCTGATCCACCGATTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCt                                                                                                   <  1:165774/150‑1 (MQ=255)                                                 tttGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCtt                                                                                                  >  1:753408/1‑150 (MQ=255)                                                               gATCCACCGAGTGGGCTGTTGCGCGGGCAGGCGCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGGAGCTTCAt                                                                                    >  2:980829/1‑150 (MQ=255)                                                                aTCCACCGAGTGGGCTGTTTCTCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATg                                                                                   >  1:1163721/1‑150 (MQ=255)                                                                   cACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGcagcccactcggtggatcaggcctcctgcaaagctcgcggccgcccgctgcgctgctcatcggc                                                                                  >  2:714995‑M2/1‑84 (MQ=255)                                                                   cACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGcagcccactcggtggatcaggcctcctgcaaagctcgcggccgcccgctgcgctgctcatcggc                                                                                  <  1:714995‑M2/148‑65 (MQ=255)                                                                    aCCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCAAACAAAAACCGTGCATCCGGCTGTTGTTGGAGCGGGGATGTCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGaaaa                                                                               >  1:510712/1‑150 (MQ=255)                                                                         gttagCTGTTTCGCGTGCATCTCCAATTACACATGTGAAGCCTGTGCAGTCCTTGTTGGAACGATCACGCCCGCTAAGCAGCCAACACCCAAACAACAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTg                                                                          <  2:465406/146‑1 (MQ=255)                                                                         gTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCa                                                                                     >  2:334438/1‑139 (MQ=255)                                                                         gTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCa                                                                                     <  1:334438/139‑1 (MQ=255)                                                                           gggCTGTTTCGCGGGCCTGCTCGCTCCCACAGGTGAAGCCTGTGCAGTCGTCGTTGTAGCGGGGATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCACCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGAt                                                                        <  1:437698/150‑1 (MQ=255)                                                                                       gggCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGctc                                                            <  1:551625/150‑1 (MQ=255)                                                                                         gCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGc                                                              <  1:998441/146‑1 (MQ=255)                                                                                         gCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGc                                                              >  2:998441/1‑146 (MQ=255)                                                                                           aTGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAGGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCtgtg                                                        >  1:802165/1‑150 (MQ=255)                                                                                             gCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAAcagcccaatcggtggatcagggctcctgcaaagctcgcggccgcacgctgagcggctcaccggaaccgccctgcgcctgctgcaactggaag                                                      <  2:330532‑M2/150‑93 (MQ=255)                                                                                              cccGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGcagcccactcggcggatcaggcctcctgcaaagctcgcggccgcccgctgcgctgctcatcggcaccgccctgggcctgctgcaactggaagt                                                     <  1:892341‑M2/150‑94 (MQ=255)                                                                                              cccGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCg                                                     >  1:955170/1‑150 (MQ=255)                                                                                              cccGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAAcagcccactcggtggatcaggcctcctgcaaagctcgcggccgcccgctgcgctgctcatcggcaccgccctgggcctgctgcaactggaagt                                                     <  1:1128925‑M2/150‑94 (MQ=255)                                                                                                    cccACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCAGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAATGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCAtc                                               <  2:294701/150‑1 (MQ=255)                                                                                                     ccACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGctct                                                           >  1:77489/1‑137 (MQ=255)                                                                                                     ccACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGctct                                                           <  2:77489/137‑1 (MQ=255)                                                                                                     ccACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGACAtcg                                              >  2:785676/1‑150 (MQ=255)                                                                                                      cacaGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCGCCAAAGGCCGGCCGCTGCATTGAGAGCAGCGCCGAGGAAACGCTGATCAAGGACTGCTCTGTGTCGGCCAtcgt                                             >  1:1173061/1‑150 (MQ=255)                                                                                                        caGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCCGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCAtcgtcg                                           <  2:802165/150‑1 (MQ=255)                                                                                                        caGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCtt                                                                                                  <  2:157504/95‑1 (MQ=255)                                                                                                        caGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCtt                                                                                                  >  1:157504/1‑95 (MQ=255)                                                                                                                               gttgGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCGGCAGCATTGCCACGACGAtc                    >  2:1077219/1‑150 (MQ=255)                                                                                                                                ttgGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCGGCAGCATTGCCACGACGAtct                   >  1:864723/1‑150 (MQ=255)                                                                                                                                           aTGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCGGCAGCATTGCCACGACGATCTCCTACGCCGGc        <  2:864723/150‑1 (MQ=255)                                                                                                                                             gCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGACGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCGGCAGCATTGCCACGACGATCTCCTACGCCGGccc      >  2:16014/1‑150 (MQ=255)                                                                                                                                               ccGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCGGCAGCATTGCCACGACGATCTCCTACGCCGGCCCGt    >  2:35947/1‑150 (MQ=255)                                                                                                                                                cgcgAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCGGCAGCATTGCCACGACGATCTCCTACGCCGGCCCGtt   <  1:35947/150‑1 (MQ=255)                                                                                                                                                 gcgAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCGGCAGCATTGCCACGACGATCTCCTACGCCGGCCCGTTg  >  2:1205190/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                 GCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCGGCAGCATTGCCACGACGATCTCCTACGCCGGCCCGTTG  >  NC_002947/3588059‑3588352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.