New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4140190	54 (1.200)	6 (0.140)	6/232	NT	10.4%	intergenic (+38/‑227)	PP_3644/PP_5609	monooxygenase subunit/hypothetical protein
	?	NC_002947	= 4140213	53 (1.260)					intergenic (+61/‑204)	PP_3644/PP_5609	monooxygenase subunit/hypothetical protein

GGAACTGGGCGTCGACGAGTTCAGCTTCTGGTGCGACAACAGCTTGCCCCACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATT  >  NC_002947/4140041‑4140337                                                                                                                                                      |                                                                                                                                                     ggAACTGGGCGTCGACGAGTTCAGCTTCTGGTGCGACAACAGCTTGCCCCACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTC                                                                                                                                                      <  1:559389‑M1/150‑1 (MQ=255)      tGGGCGTCGACGAGTTCAGCTTCTGGTGCGACAACAGCTTGCCCCACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTg                                                                                                                                                 >  1:1137392/1‑150 (MQ=255)                 gaGTTCAGCTTCTGGTGCGACAACAGCTTGCCCCACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCgg                                                                                                                                      >  2:651469/1‑150 (MQ=255)                    ttCAGCTTCTGGTGCGACAACAGCTTGCCCCACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCtt                                                                                                                                         >  1:736204/1‑144 (MQ=255)                    ttCAGCTTCTGGTGCGACAACAGCTTGCCCCACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCtt                                                                                                                                         <  2:736204/144‑1 (MQ=255)                    ttCAGCTTCTGGTGCGACAACAGCTTGCCCCACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCt                                                                                                                                   <  2:869344/150‑1 (MQ=255)                       aGCTTCTGGTGCGACAACAGCTTGCCCCACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCg                                                                                                                                >  1:739054/1‑150 (MQ=255)                          ttCTGGTGCGACAACAGCTTGCCCCACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGGGGTGCCGGCGTTCGCCTTAGTTCCCAGCGCCTGTGTCATTGCGGGACGCGCCCGCTCCCGTGGACCCGTTCGGCCTGCGTga                                                                                                                             <  2:78583‑M2/150‑3 (MQ=255)                            cTGGCGCGACAACAGCTTGCCCCACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTgagc                                                                                                                           >  1:578917‑M2/1‑146 (MQ=255)                                    acaacaGCTTGCCCCACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTTCGGGCCGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑tttt                                                                                                                  >  1:861457/1‑150 (MQ=255)                                     caacaGCTTGCCCCACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCacgcaggccgaaggggcccacgggagcgggc                                                                                                                       >  1:768851‑M1/1‑114 (MQ=255)                                     caacaGCTTGCCCCACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCacgcaggccgaaggggcccacgggagcgggc                                                                                                                       <  2:768851‑M1/145‑32 (MQ=255)                                         aGCTTGCCCCACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTg                                                                                                             >  1:1050170/1‑150 (MQ=255)                                           cTTGCCCCACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGGATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGaa                                                                                                           >  1:1195921/1‑150 (MQ=255)                                           cTTGCCCCACGCCGAGAAGAAGAAGTCGCTCGAGATGCTAACCTAGGTAGCAGCCTAGGCGTTCGCCTGAAGTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGaa                                                                                                           >  1:626120/1‑150 (MQ=255)                                             tGCCCCACGCCGAGAAGAAGAAGTCGCCCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAAATCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAAc                                                                                                         <  1:78583/150‑1 (MQ=255)                                                 ccACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGc                                                                                                                                 >  2:1180812/1‑123 (MQ=255)                                                 ccACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGc                                                                                                                                 <  1:1180812/123‑1 (MQ=255)                                                 ccACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTg                                                                                                             >  2:665904/1‑142 (MQ=255)                                                 ccACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTg                                                                                                             <  1:665904/142‑1 (MQ=255)                                                        gagaAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTcc                                                                                              >  1:602830/1‑150 (MQ=255)                                                        gagaAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑‑TTTTTTTGAAACCTGTGCAGTccc                                                                                             <  1:120980/150‑1 (MQ=255)                                                            agaagaagTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCtgt                                                                                          <  2:582207/150‑1 (MQ=255)                                                             gaagaagTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGc                                                                                                                                     >  1:296613/1‑107 (MQ=255)                                                             gaagaagTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCGCCCGTGGGCCCCTTCGGc                                                                                                                                     <  2:296613/107‑1 (MQ=255)                                                                          gAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGc                                                                            >  1:111204/1‑150 (MQ=255)                                                                              tGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCcgc                                                                        <  2:602830/150‑1 (MQ=255)                                                                                   atcaAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCacgcaggccgaaggggcccacgggagcggg                                                                                                                        >  2:897466‑M1/1‑68 (MQ=255)                                                                                   atcaAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCacgcaggccgaaggggcccacgggagcggg                                                                                                                        <  1:897466‑M1/98‑31 (MQ=255)                                                                                   atcaAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAaga                                                                   >  1:849580/1‑150 (MQ=255)                                                                                   atcaAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAaga                                                                   >  1:178880/1‑150 (MQ=255)                                                                                    tcaAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAagag                                                                  <  2:626120/150‑1 (MQ=255)                                                                                      aaGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTgagc                                                                                                                           >  1:135941‑M2/1‑88 (MQ=255)                                                                                      aaGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAAc                                                                                                         <  1:330059/109‑1 (MQ=255)                                                                                      aaGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAAc                                                                                                         >  2:330059/1‑109 (MQ=255)                                                                                      aaGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGc                                                                <  1:643272/150‑1 (MQ=255)                                                                                      aaGGAAGTGGTGCCGGCGCTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTgagc                                                                                                                           <  2:135941‑M2/92‑5 (MQ=255)                                                                                        ggAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCacgcatgccgaaggggcccacgggagcgggcgcgtcccgcaat                                                                                                           >  2:241064‑M1/1‑63 (MQ=255)                                                                                        ggAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCacgcatgccgaaggggcccacgggagcgggcgcgtcccgcaat                                                                                                           <  1:241064‑M1/106‑44 (MQ=255)                                                                                         gAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAg                                                             <  2:191277/150‑1 (MQ=255)                                                                                               gtgCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGa                                                       <  2:1050170/150‑1 (MQ=255)                                                                                               gtgCCGGCGTTCGCCTGAATTCCCATTGCCTGAATAATTGAGGGAAGCCCCCGTTCCCGTGGGTCTCTTCGGCCTGCGTTAGCGGGC‑TGTTTTTTTAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGa                                                       <  2:739054/150‑1 (MQ=37)                                                                                                  ccGGCTTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGGGGGCCCCTGCGGCCTGCGTGAGCGGGC‑TTGTTTTTGAAACCTGTGCAGCCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGacaa                                                    <  1:91294/150‑1 (MQ=39)                                                                                                  ccGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGacaa                                                    <  1:227182/150‑1 (MQ=255)                                                                                                   cGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGacaac                                                   <  2:111204/150‑1 (MQ=255)                                                                                                       gTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAAc                                                                                                         <  1:226537/92‑1 (MQ=255)                                                                                                       gTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAAc                                                                                                         >  2:226537/1‑92 (MQ=255)                                                                                                         tCGCCTGAATTCCCATTGTCGGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGaa                                             <  2:821980/150‑1 (MQ=255)                                                                                                           gCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAGCAGAGAAAt                                           <  1:651469/150‑1 (MQ=255)                                                                                                            ccTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACaga                                                <  1:1195825/144‑1 (MQ=255)                                                                                                            ccTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACaga                                                >  2:1195825/1‑144 (MQ=255)                                                                                                            ccTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATc                                          >  1:1069868/1‑150 (MQ=255)                                                                                                              tGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGTCCAGTACAGACAACAGAGAAATCaa                                        <  2:849580/150‑1 (MQ=255)                                                                                                              tGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCaa                                        <  2:1137392/150‑1 (MQ=255)                                                                                                                     ccATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCa                                 >  1:732109/1‑150 (MQ=255)                                                                                                                      cATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAg                                <  2:241998/150‑1 (MQ=255)                                                                                                                       aTTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGCCACCGTCAGCCGTCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAgg                               >  2:336810/1‑150 (MQ=255)                                                                                                                       aTTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAgg                               >  1:108501/1‑150 (MQ=255)                                                                                                                        ttGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGc                              >  1:517270/1‑150 (MQ=255)                                                                                                                        ttGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGc                              >  1:517431/1‑150 (MQ=255)                                                                                                                          gCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACGGAGAAATCaa                                        <  2:416820/138‑1 (MQ=255)                                                                                                                          gCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCaa                                        >  1:416820/1‑138 (MQ=255)                                                                                                                            cTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCAc                           >  2:1111856/1‑150 (MQ=255)                                                                                                                             tGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCt                         >  1:724278/1‑150 (MQ=255)                                                                                                                                aTCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTc                      <  2:1195921/150‑1 (MQ=255)                                                                                                                                   aTTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTc                   >  1:1073720/1‑150 (MQ=255)                                                                                                                                   aTTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCATGCGTgagcgggcgcgtcccgcaatgattcaggcaatgggaattcaggcgaacgccggcaccacttcc                                                                >  2:241064‑M2/1‑43 (MQ=255)                                                                                                                                   aTTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCATGCGTgagcgggcgcgtcccgcaatgattcaggcaatgggaattcaggcgaacgccggcaccacttcc                                                                <  1:241064‑M2/106‑64 (MQ=255)                                                                                                                                               gcCCGCTCCCGTGGGCCCCTTCGGCCTGCGTgagcgggcgcgtcccgcaatgattcaggcaatgggaattcaggcgaacgccggcaccacttccttgatgaacagctcgagcgacttcttcttctcggcgtggggcaagctgttg             >  1:768851‑M2/1‑31 (MQ=255)                                                                                                                                               gcCCGCTCCCGTGGGCCCCTTCGGCCTGCGTgagcgggcgcgtcccgcaatgattcaggcaatgggaattcaggcgaacgccggcaccacttccttgatgaacagctcgagcgacttcttcttctcggcgtggggcaagctgttg             <  2:768851‑M2/145‑115 (MQ=255)                                                                                                                                                cccGCTCCCGTGGGCCCCTTCGGCCTGCGTgagcgggcgcgtcccgcaatgattcaggcaatgggaattcaggcgaacgccggcaccacttccttgat                                                           <  1:897466‑M2/98‑69 (MQ=255)                                                                                                                                                cccGCTCCCGTGGGCCCCTTCGGCCTGCGTgagcgggcgcgtcccgcaatgattcaggcaatgggaattcaggcgaacgccggcaccacttccttgat                                                           >  2:897466‑M2/1‑30 (MQ=255)                                                                                                                                                  cGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGaaa    <  2:929464/150‑1 (MQ=255)                                                                                                                                                  cGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGaaa    >  1:929464/1‑150 (MQ=255)                                                                                                                                                   gCTCacgcaggccgaaggggcccacgggagcgggcgcgtcccgcaatgattcaggcaatgggaattcaggcgagcgccggcaccacttcctt                                                              <  2:135941‑M1/92‑89 (MQ=255)                                                                                                                                                   gCTCacgcaggccgaaggggcccacgggagcgggcgcgtcccgcaatgattcaggcaatgggaattcaggcgaacgccggcaccacttccttgatgaacagctcgagcgacttcttcttctcggcgtggggcaagctgttgtcgcgccag    >  1:578917‑M1/1‑4 (MQ=255)                                                                                                                                                   gCTCacgcaggccgaaggggcccacgggagcgggcgcgtcccgcaatgattcaggcaatgggaattcaggcgaacgccggcaccacttcctt                                                              >  1:135941‑M1/1‑4 (MQ=255)                                                                                                                                                     tCacgcaggccgaacgggtccacgggagcgggcgcgtcccgcaatgacacaggcgctgggaactaaggcgaacgccggcaccccttccttgatgaacagctcgagcgacttcttcttctcggcgtggggcaagctgttgtcgcaccagaa  <  2:78583‑M1/150‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                     GGAACTGGGCGTCGACGAGTTCAGCTTCTGGTGCGACAACAGCTTGCCCCACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGC‑TTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATT  >  NC_002947/4140041‑4140337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.