New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4419732 =	38 (0.840)	3 (0.070)	3/232	NT	9.3%	coding (455/552 nt)	PP_3910	hypothetical protein
	?	NC_002947	4419828 =	23 (0.540)					coding (551/552 nt)	PP_3910	hypothetical protein

TGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATGAGCAACTACAACTGCGATTACGTTCGCCGCCAT  >  NC_002947/4419585‑4419879                                                                                                                                                    |                                                                                                                                                    tGGACGACCTCTGGAAAGCACACTGCTGGAAGGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAgg                                                                                                                                                   >  1:31554/1‑150 (MQ=255)     tcaagccgatgtaatggccgcggtcggccatgatcacgcctggctcaccgttggcgatcacgcgtcgcccgatctcggccggcacgtcgtaatggcggcgaacgtaatcgcagttgtagttgctcatggatcgctccctaatcAGGCCGc                                                                                                                                               <  1:786613‑M1/7‑1 (MQ=255)        ccTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGa                                                                                                                                            <  1:618432/150‑1 (MQ=255)        ccTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGAGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGa                                                                                                                                            <  2:808505/150‑1 (MQ=255)            tGGAAAGCACACTGCCCGGACGCTAGCGACCGGGACGAAATGTGGGAGGCCATCGGCGGCGAGCGTGGCGGCATCTGGCTCATTGGCGGTAGGTGCTGCAGTCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGc                                                                                                                                        <  2:81652/150‑1 (MQ=255)             ggAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCg                                                                                                                                       >  1:885017/1‑150 (MQ=255)               aaaGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGAt                                                                                                                                     <  1:1115/150‑1 (MQ=255)                    acacTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGa                                                                                                                                >  2:786613/1‑150 (MQ=255)                        tGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGc                                                                                                                            >  2:16971/1‑150 (MQ=255)                              gACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGAtt                                                                                                                      <  1:894530/150‑1 (MQ=255)                                   tATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCACTTTGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGAt                                                                                                                 <  1:676488/150‑1 (MQ=255)                                       gACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTc                                                                                                             >  1:885033/1‑150 (MQ=255)                                            ggACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTcagcag                                                                                                        >  2:1129881/1‑150 (MQ=255)                                                 aaaTGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGt                                                                                                   >  2:1173478/1‑150 (MQ=255)                                                     gtgGGAGGCCATCGGGGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGa                                                                                               <  2:91726/150‑1 (MQ=255)                                                     gtgGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGa                                                                                               <  2:885033/150‑1 (MQ=255)                                                       gggAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAgg                                                                                             <  1:338980/150‑1 (MQ=255)                                                        tggcgatcacgcgtcgcccgatctcggcgggcacgtcgtaatggcggcgaacgtaatcgcagttgtagttgctcatggatcgctccctaatcAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGGAGCGAGTACGAGGc                                                                                            >  2:355878‑M1/93‑150 (MQ=255)                                                            gCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTACTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCt                                                                                        >  1:329343/1‑150 (MQ=255)                                                                      tCGGGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGAGATACCGTATACCTGAACCGGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCt                                                                              <  2:764894/150‑1 (MQ=255)                                                                        gAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCTTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTg                                                                            <  1:487065/150‑1 (MQ=255)                                                                            gTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTcagca                                                                                                         <  1:152112/117‑1 (MQ=255)                                                                            gTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTcagca                                                                                                         >  2:152112/1‑117 (MQ=255)                                                                                cggccggcacgtcgtaatggcggcgaacgtaatcgcagttgtagttgctcatggatcgctccctaatcAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCa                                                                    <  1:1119858‑M1/82‑1 (MQ=255)                                                                                   cATCTTGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAgcg                                                                 <  1:16971/150‑1 (MQ=255)                                                                                         gCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTAc                                                                                                 >  2:878103/1‑112 (MQ=255)                                                                                         gCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTAc                                                                                                 <  1:878103/112‑1 (MQ=255)                                                                                                atggcggcgaacgtaatcgcagttgtagttgctcatggatcgctccctaatcAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGa                                                    >  2:1119858‑M1/53‑150 (MQ=255)                                                                                                 gCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATc                                                                                                                <  1:607737/89‑1 (MQ=255)                                                                                                 gCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATc                                                                                                                >  2:607737/1‑89 (MQ=255)                                                                                                 gCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGAt                                                   >  2:1067328/1‑150 (MQ=255)                                                                                                     tATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAgg                                               <  1:1129881/150‑1 (MQ=255)                                                                                                       tgtgCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGCGa                                             <  1:1205825/150‑1 (MQ=255)                                                                                                            ttCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGAt                                        >  2:18300/1‑150 (MQ=255)                                                                                                             tCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATc                                       <  2:1092689/150‑1 (MQ=255)                                                                                                                gCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGTTGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCGCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCAt                                    >  1:394705/1‑150 (MQ=255)                                                                                                                gCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCAt                                    <  1:184597/150‑1 (MQ=255)                                                                                                                 ccACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATg                                   >  1:43772/1‑150 (MQ=255)                                                                                                                    cGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAgg                                                                                             <  1:38207/89‑1 (MQ=255)                                                                                                                    cGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGAACGTCAGCAGCGAGTACGAgg                                                                                             >  2:38207/1‑89 (MQ=255)                                                                                                                                ataCCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATGAGCAACTACAACTGc                    <  2:43772/150‑1 (MQ=255)                                                                                                                                            gggCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGc                                                        <  2:345050/102‑1 (MQ=255)                                                                                                                                            gggCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGc                                                        >  1:345050/1‑102 (MQ=255)                                                                                                                                                  caAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATGAGCAACTACAACTGCGATTACGTTCGCCGCCAt  >  2:16121/1‑150 (MQ=255)                                                                                                                                                  caAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATGAGCAACTACAACTGCGATTACGTTCGCCGCCAt  >  2:17763/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                    TGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATGAGCAACTACAACTGCGATTACGTTCGCCGCCAT  >  NC_002947/4419585‑4419879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.