New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4419732 =	38 (0.840)	3 (0.070)	3/232	NT	9.3%	coding (455/552 nt)	PP_3910	hypothetical protein
	?	NC_002947	4419828 =	23 (0.540)					coding (551/552 nt)	PP_3910	hypothetical protein

GGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATGAGCAACTACAACTGCGATTACGTTCGCCGCCATTACGACGTGCCGGCCGAGATCGGGCGACGCGTGATCGCCAACGGTGAGCCAGGCGTGATCATGGCCGACCGCGGCCATTACATCGGCGTGATCCTCGA  >  NC_002947/4419680‑4419977                                                                                                                                                     |                                                                                                                                                      atggcggcgaacgtaatcgcagttgtagttgctcatggatcgctccctaatcAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGa                                                                                                                                                      >  2:1119858‑M1/53‑150 (MQ=255)  gCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGAt                                                                                                                                                     >  2:1067328/1‑150 (MQ=255)      tATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAgg                                                                                                                                                 <  1:1129881/150‑1 (MQ=255)        tgtgCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGCGa                                                                                                                                               <  1:1205825/150‑1 (MQ=255)             ttCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGAt                                                                                                                                          >  2:18300/1‑150 (MQ=255)              tCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATc                                                                                                                                         <  2:1092689/150‑1 (MQ=255)                 gCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGTTGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCGCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCAt                                                                                                                                      >  1:394705/1‑150 (MQ=255)                 gCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCAt                                                                                                                                      <  1:184597/150‑1 (MQ=255)                  ccACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATg                                                                                                                                     >  1:43772/1‑150 (MQ=255)                                 ataCCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATGAGCAACTACAACTGc                                                                                                                      <  2:43772/150‑1 (MQ=255)                                                   tcaggccgctttgcgctggttgagcaagcgctggcgagcggcctcgtactcgctgctgacgatctcaatcaggccgtcgacatcgccgtcagcggcctGATTAGGGAGCGATCCATGAGCAACTACAACTGCGATTACGTTCGCCGCCAt                                                                                                    >  2:1119858‑M2/99‑150 (MQ=255)                                                   caAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATGAGCAACTACAACTGCGATTACGTTCGCCGCCAt                                                                                                    >  2:17763/1‑150 (MQ=255)                                                   caAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATGAGCAACTACAACTGCGATTACGTTCGCCGCCAt                                                                                                    >  2:16121/1‑150 (MQ=255)                                                           CTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATGAGCAACTACAACTGCGATTACGTTCGCCGCCATTACGACGt                                                                                            >  1:1067328‑M1/1‑150 (MQ=255)                                                            TGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATGAGCAACTACAACTGCGa                                                                                                                    >  1:299948‑M1/1‑125 (MQ=255)                                                            TGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATGAGCAACTACAACTGCGa                                                                                                                    <  2:299948‑M1/125‑1 (MQ=255)                                                              aCGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCGCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATCAGCAACTACAACTGCGATTACGTTCGAAACCATGacgaacgccc                                                                                         >  2:670453/1‑144 (MQ=255)                                                                   tggttgagcaagcgctggcgagcggcctcgtactcgctgctgacgatctcaatcaggccgtcgacatcgccgtcagcggcctGATTAGGGAGCGATCCATGAGCAACTACAACTGCGATTACGTTCGCCGCCATTACGACGTgccggccg                                                                                    <  1:1119858‑M2/68‑1 (MQ=255)                                                                        cGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATGAGCAACTACAACTGCGATTACGTTCGCCGCCATTACGACGTGCCGGCCGAGATc                                                                               <  2:885017/150‑1 (MQ=255)                                                                                 gATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATGAGCAACTACAACTGCGATTACGTTCGCCGCCATTACGACGTGCCGGCCGAGATCGGGCGAcgc                                                                      <  1:17763/150‑1 (MQ=255)                                                                                           gcctcgtactcgctcctgacgatctcaatcaggccgtcgacatcgccgtcagcggcctGATTAGGGAGCGATCCATGAGCAACTACAACTGCGATTACGTTCGCCGCCATTACGACGTGCCCGCCGAGATCGGGCGACGCGTGATCGCCa                                                            >  2:355878‑M2/59‑150 (MQ=255)                                                                                                 agcGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATGAGCAACTACAACTGCGATTACGTTCGCCGCCATTACGACGTGCCGGCCGAGATCggg                                                                            >  1:391252/1‑128 (MQ=255)                                                                                                 agcGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATGAGCAACTACAACTGCGATTACGTTCGCCGCCATTACGACGTGCCGGCCGAGATCggg                                                                            <  2:391252/128‑1 (MQ=255)                                                                                                  gcGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATGAGCAACTACAACTGCGATTACGTTCGCCGCCATTACGACGTGCCGGCCGAGATCGGGCGACGCGTGATCGCCAACGGTGa                                                     <  1:18300/150‑1 (MQ=255)                                                                                                          gAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATGAGCAACTACAACTGCg                                                                                                                     <  1:455729/78‑1 (MQ=255)                                                                                                          gAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATGAGCAACTACAACTGCg                                                                                                                     >  2:455729/1‑78 (MQ=255)                                                                                                               cGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATGAGCAACTACAACTGCGATTACGTTCGCCGCCATTACGACGTGCCGGCCGAGATCGGGCGACGCGTGATCGCCAACGGTGAGCCAGGCGTGATc                                        >  1:1190/1‑150 (MQ=255)                                                                                                                gCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATGAGCAACTACAACTGCGATTACGTTCGCCGCCATTACGACGTGCCGGCCGAGATCGGGCGACGCGTGATCGCCAACGGTGAGCCAGGCGTGATCa                                       >  2:327380/1‑150 (MQ=255)                                                                                                                                  aaCCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATGAGCAACTACAACTGCGATTACGTTCGCCGCCATTACGACGTGCCGGCCGAGATCGGGCGACGCGTGATCGCCAACGGTGAGCCAGGCGTGATCATGGCCGACCGCGGCCAtt                     >  1:783440/1‑150 (MQ=255)                                                                                                                                  aaCCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATGAGCAACTACAACTGCGATTACGTTCGCCGCCATTACGACGTGCCGGCCGAGATCGGGCGACGCGTGATCGCCAACGGTGAGCCAGGCGTGATCATGGCCGACCGCGGCCAtt                     >  1:309802/1‑150 (MQ=255)                                                                                                                                   aCCAGCGCAAAGCGGCCTGATTAGGGAGCGCTCACTCCGCCAGGACCCAGGCGATTACGTTCGCCGCCATTACGTGGTTCCGGCCGAGATCGGGCGACGCGTGATCGCCAACGGTGAGCCAGGCGTGATCATGGCCGACCGCGGCCATTa                    <  1:1173478/150‑1 (MQ=255)                                                                                                                                              gcggcctGATTAGGGAGCGATCCATGAGCAACTACAACTGCGATTACGTTCGCCGCCATTACGACGTGCCGGCCGAGATCGGGCGACGCGTGATCGCCAACGGTGAGCCAGGCGTGATCATGGCCGACCGCGGCCATTACATCGGCTTGa         <  1:786613‑M2/143‑1 (MQ=255)                                                                                                                                                     gATTTGGGAGGGGTCCATTAGCAACTGCAACTGCGATTACGTGCGCGGCCATTACGACGTGCCGGCCGAGACCGGGCGACGCGTGATCGCCAACGGTGAGCCAGGCGTGATCATGGCCGCCCGCGGCCATTACATCGGCGTGATCCTCGa  <  2:329343/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      GGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAACCTGGGCAGCAAGGCCGCTGACGGCGATGTCGACGGCCTGATTGAGATCGTCAGCAGCGAGTACGAGGCCGCTCGCCAGCGCTTGCTCAACCAGCGCAAAGCGGCCTGATTAGGGAGCGATCCATGAGCAACTACAACTGCGATTACGTTCGCCGCCATTACGACGTGCCGGCCGAGATCGGGCGACGCGTGATCGCCAACGGTGAGCCAGGCGTGATCATGGCCGACCGCGGCCATTACATCGGCGTGATCCTCGA  >  NC_002947/4419680‑4419977

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.