New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4545916	33 (0.730)	4 (0.090)	4/232	NT	10.7%	coding (1474/1491 nt)	pydP	NCS1 family transporter PydP
	?	NC_002947	= 4545938	36 (0.850)					coding (1452/1491 nt)	pydP	NCS1 family transporter PydP

GTCCATCAGCGACTGCCACAGGCGGGTGCTGTCGACGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATCGCCATTACCGTCAGCCCTACTGGCAA  >  NC_002947/4545772‑4546060                                                                                                                                                 |                                                                                                                                                 gTCCATCAGCGACTGCCACAGGCGGGTGCTGTCGACGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAAcc                                                                                                                                             >  1:733356/1‑150 (MQ=255)      tCAGCGACTGCCACAGGCGGGTGCTGTCGACGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACTGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCAcc                                                                                                                                        >  1:655176/1‑150 (MQ=255)      tCAGCGACTGCCACAGGCGGGTGCTGTCGACGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCAcc                                                                                                                                        >  1:1101386/1‑150 (MQ=255)                ccACAGGCGGGTGCTGTCGACGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCggcacgcaacccggtgcggt                                                                                                                              >  2:257329‑M1/1‑130 (MQ=255)                        gggTGCTGTCGACGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCgccaaa                                                                                                                      <  1:1055747‑M2/150‑7 (MQ=255)                        gggTGCTGTCGACGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCgccaaa                                                                                                                      <  1:1055971‑M2/150‑7 (MQ=255)                            gCTGTCGACGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCggcacgcaacccggtgcggttggccaaaccct                                                                                                                  <  1:257329‑M1/150‑33 (MQ=255)                                   aCGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCgc                                                                                                                          <  2:522458‑M2/135‑3 (MQ=255)                                   aCGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCgc                                                                                                                          >  1:522458‑M2/1‑133 (MQ=255)                                       gACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCgcggcg                                                                                                       >  1:789344/1‑150 (MQ=255)                                         cGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGC                                                                                                                                                  <  2:296140‑M1/105‑1 (MQ=255)                                         cGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGC                                                                                                                                                  >  1:296140‑M1/1‑105 (MQ=255)                                           ggCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACa                                                                                                   <  1:1103693/150‑1 (MQ=255)                                            gCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAg                                                                                                  >  1:305774/1‑150 (MQ=255)                                                tGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCa                                                                                              >  1:883207/1‑150 (MQ=255)                                                  gTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCgcgg                                                                                                         <  1:1090110/137‑1 (MQ=255)                                                  gTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCgcgg                                                                                                         >  2:1090110/1‑137 (MQ=255)                                                     ttCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGcc                                                                                         <  2:1101386/150‑1 (MQ=255)                                                          gATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCggcacgcaacccggtgcggttggccaaacccttgc                                                                                                               <  2:1082360‑M1/123‑36 (MQ=255)                                                          gATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCggcacgcaacccggtgcggttggccaaacccttgc                                                                                                               >  1:1082360‑M1/1‑88 (MQ=255)                                                          gATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCAc                                                                                                                                         <  2:1061616/97‑1 (MQ=255)                                                          gATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCAc                                                                                                                                         >  1:1061616/1‑97 (MQ=255)                                                             ctctTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACg                                                                                 >  1:6913/1‑150 (MQ=255)                                                                tttGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGc                                                                              >  2:1032815/1‑150 (MQ=255)                                                                  tGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCg                                                                            <  2:733356/150‑1 (MQ=255)                                                                        gggTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAAc                                                                      <  2:305774/150‑1 (MQ=255)                                                                          gTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCa                                                                    <  2:883207/150‑1 (MQ=255)                                                                            cactggCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGc                                                                  <  2:655176/146‑1 (MQ=255)                                                                              cGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCa                                                                <  1:610719/150‑1 (MQ=255)                                                                              cGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCa                                                                <  2:1055747/150‑1 (MQ=255)                                                                              cGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCa                                                                <  2:1055971/150‑1 (MQ=255)                                                                                ggCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATa                                                              >  2:1184950/1‑150 (MQ=255)                                                                                     ctcCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGtt                                                                                                                                   >  1:17762/1‑76 (MQ=255)                                                                                     ctcCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGtt                                                                                                                                   <  2:17762/76‑1 (MQ=255)                                                                                              gCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATa                                                              >  1:391848/1‑136 (MQ=255)                                                                                              gCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATa                                                              <  2:391848/136‑1 (MQ=255)                                                                                                   ttATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGaaa                                           >  1:359427/1‑150 (MQ=255)                                                                                                        gggtgtACGGCCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAActgct                                      <  2:789344/147‑1 (MQ=255)                                                                                                          ttgtACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGt                                    <  1:1032815/150‑1 (MQ=255)                                                                                                                  gCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATc                            >  1:188824/1‑150 (MQ=255)                                                                                                                     tctTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATCGcc                         >  2:1197964/1‑150 (MQ=255)                                                                                                                         cGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATCGCCATTa                     >  1:281188/1‑150 (MQ=255)                                                                                                                         cGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATCGCCATTa                     <  2:651856/150‑1 (MQ=255)                                                                                                                                tCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATCGCCATTACCGTCAg              >  2:477803/1‑150 (MQ=255)                                                                                                                                     gcaaggGTTTGGCCAACCGCACCGGGTTGCGTGCCgccaaacccttgccttgaggcctcgaagaggcccgtacaaacaataagaagcctgaaggagaagcccgtgacccccgtcaaagagatc                                    >  1:1082360‑M2/1‑35 (MQ=255)                                                                                                                                     gcaaggGTTTGGCCAACCGCACCGGGTTGCGTGCCgccaaacccttgccttgaggcctcgaagaggcccgtacaaacaataagaagcctgaaggagaagcccgtgacccccgtcaaagagatc                                    <  2:1082360‑M2/123‑89 (MQ=255)                                                                                                                                        aggGTTTGGCCAACCGCACCGGGTTGCGTGCCgccaaacccttgccttgaggcctcgaagaggcccgtacaaacaataagaagcctgaaggagaagcccgtgacccccgtcaaagagatcctgaagaccaacgcccgtcacgtcgacagc      <  1:257329‑M2/150‑119 (MQ=255)                                                                                                                                            tttGGCggcacgcaacccggtgcggttggccaaacccttgccttgaggcctcgaagaggcccgtacaaacaataagaagcctgaaggagaagcccgtgacccccgtcaaagagatcctgaagaccaacgcccgtcacgtcgacagcaccc  <  1:1055971‑M1/150‑145 (MQ=255)                                                                                                                                            tttGGCggcacgcaacccggtgcggttggccaaacccttgccttgaggcctcgaagaggcccgtacaaacaataagaagcctgaaggagaagcccgtgacccccgtcaaagagatcctgaagaccaacgcccgtcacgtcgacagcaccc  <  1:1055747‑M1/150‑145 (MQ=255)                                                                                                                                                gcggcacgcaacccggtgcggttggccaaacccttgccttgaggcctcgaagaggcccgtacaaacaataagaagcctgaaggagaagcccgtgacccccgtcaaagagatcctgaagaccaacgcccgtcacgt             <  2:522458‑M1/135‑134 (MQ=255)                                                                                                                                                gcggcacgcaacccggtgcggttggccaaacccttgccttgaggcctcgaagaggcccgtacaaacaataagaagcctgaaggagaagcccgtgacccccgtcaaagagatcctgaagaccaacgcccgtcacgt             >  1:522458‑M1/1‑2 (MQ=255)                                                                                                                                                 ccAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATCGCCATTACCGTCAGCCCTACTg      <  2:729727/141‑1 (MQ=255)                                                                                                                                                 ccAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATCGCCATTACCGTCAGCCCCACTg      >  1:729727/1‑141 (MQ=255)                                                                                                                                                 |                                                                                                                                                 GTCCATCAGCGACTGCCACAGGCGGGTGCTGTCGACGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATCGCCATTACCGTCAGCCCTACTGGCAA  >  NC_002947/4545772‑4546060

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.