New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4545916	33 (0.730)	4 (0.090)	4/232	NT	10.7%	coding (1474/1491 nt)	pydP	NCS1 family transporter PydP
	?	NC_002947	= 4545938	36 (0.850)					coding (1452/1491 nt)	pydP	NCS1 family transporter PydP

GGGTGCTGTCGACGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATCGCCATTACCGTCAGCCCTACTGGCAAGGCGAAGGCGGCAAAACCGGC  >  NC_002947/4545795‑4546081                                                                                                                                                |                                                                                                                                                gggTGCTGTCGACGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCgccaaa                                                                                                                                           <  1:1055747‑M2/150‑7 (MQ=255) gggTGCTGTCGACGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCgccaaa                                                                                                                                           <  1:1055971‑M2/150‑7 (MQ=255)            aCGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCgc                                                                                                                                               <  2:522458‑M2/135‑3 (MQ=255)            aCGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCgc                                                                                                                                               >  1:522458‑M2/1‑133 (MQ=255)                gACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCgcggcg                                                                                                                            >  1:789344/1‑150 (MQ=255)                    ggCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACa                                                                                                                        <  1:1103693/150‑1 (MQ=255)                     gCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAg                                                                                                                       >  1:305774/1‑150 (MQ=255)                         tGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCa                                                                                                                   >  1:883207/1‑150 (MQ=255)                           gTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCgcgg                                                                                                                              <  1:1090110/137‑1 (MQ=255)                           gTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCgcgg                                                                                                                              >  2:1090110/1‑137 (MQ=255)                              ttCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGcc                                                                                                              <  2:1101386/150‑1 (MQ=255)                                      ctctTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACg                                                                                                      >  1:6913/1‑150 (MQ=255)                                         tttGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGc                                                                                                   >  2:1032815/1‑150 (MQ=255)                                           tGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCg                                                                                                 <  2:733356/150‑1 (MQ=255)                                                 gggTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAAc                                                                                           <  2:305774/150‑1 (MQ=255)                                                   gTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCa                                                                                         <  2:883207/150‑1 (MQ=255)                                                     cactggCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGc                                                                                       <  2:655176/146‑1 (MQ=255)                                                       cGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCa                                                                                     <  1:610719/150‑1 (MQ=255)                                                       cGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCa                                                                                     <  2:1055971/150‑1 (MQ=255)                                                       cGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCa                                                                                     <  2:1055747/150‑1 (MQ=255)                                                         ggCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATa                                                                                   >  2:1184950/1‑150 (MQ=255)                                                                       gCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATa                                                                                   >  1:391848/1‑136 (MQ=255)                                                                       gCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATa                                                                                   <  2:391848/136‑1 (MQ=255)                                                                            ttATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGaaa                                                                >  1:359427/1‑150 (MQ=255)                                                                                 gggtgtACGGCCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAActgct                                                           <  2:789344/147‑1 (MQ=255)                                                                                   ttgtACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGt                                                         <  1:1032815/150‑1 (MQ=255)                                                                                           gCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATc                                                 >  1:188824/1‑150 (MQ=255)                                                                                              tctTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATCGcc                                              >  2:1197964/1‑150 (MQ=255)                                                                                                  cGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATCGCCATTa                                          <  2:651856/150‑1 (MQ=255)                                                                                                  cGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATCGCCATTa                                          >  1:281188/1‑150 (MQ=255)                                                                                                         tCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATCGCCATTACCGTCAg                                   >  2:477803/1‑150 (MQ=255)                                                                                                              gcaaggGTTTGGCCAACCGCACCGGGTTGCGTGCCgccaaacccttgccttgaggcctcgaagaggcccgtacaaacaataagaagcctgaaggagaagcccgtgacccccgtcaaagagatc                                                         >  1:1082360‑M2/1‑35 (MQ=255)                                                                                                              gcaaggGTTTGGCCAACCGCACCGGGTTGCGTGCCgccaaacccttgccttgaggcctcgaagaggcccgtacaaacaataagaagcctgaaggagaagcccgtgacccccgtcaaagagatc                                                         <  2:1082360‑M2/123‑89 (MQ=255)                                                                                                                 aggGTTTGGCCAACCGCACCGGGTTGCGTGCCgccaaacccttgccttgaggcctcgaagaggcccgtacaaacaataagaagcctgaaggagaagcccgtgacccccgtcaaagagatcctgaagaccaacgcccgtcacgtcgacagc                           <  1:257329‑M2/150‑119 (MQ=255)                                                                                                                          ccAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATCGCCATTACCGTCAGCCCTACTg                           <  2:729727/141‑1 (MQ=255)                                                                                                                          ccAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATCGCCATTACCGTCAGCCCCACTg                           >  1:729727/1‑141 (MQ=255)                                                                                                                           cAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATCGCCATTACCGTCAGCCCTACTGGCaaggcgaa                 >  2:819522/1‑150 (MQ=255)                                                                                                                           cAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATCGCCATTACCGTCAGCCCTACTGGCaaggcgaa                 >  1:505158/1‑150 (MQ=255)                                                                                                                           cAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATCGCCATTACCGTCAGCCCTACTGGCaaggcgaa                 <  1:477803/150‑1 (MQ=255)                                                                                                                             aCCGCACCGGGTTGCGTGCCgccaaacccttgccttgaggcctcgaagaggcccgtacaaacaataagaagcctgaaggagaagcccgtgacccccgtcaaagagatcctgaagaccaacgcccgtcacgtcgacagcacccgcctgtgg               >  2:257329‑M2/1‑20 (MQ=255)                                                                                                                                 cACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATCGCCATTACCGTCAGCCCTACTGGCAAGGCGAAggcggc           >  2:459414/1‑150 (MQ=255)                                                                                                                                         tGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATCGCCATTACCGTCAGCCCTACTGGCAAGGCGAAGGCGGCAAAACCgg   <  1:1184950/150‑1 (MQ=255)                                                                                                                                          gCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATCGCCATTACCGTCAGCCCTACTGGCAAGGCGAAGGCGGCAAAACCGGc  <  2:359427/150‑1 (MQ=255)                                                                                                                                          gCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATCGCCATTACCGTCAGCCCTACTGGCAAGGCGAAGGCGGCAAAACCGGc  <  2:281188/150‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                GGGTGCTGTCGACGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCCAACCGCACCGGGTTGCGTGCCGCCAAACCGCCAAGCGCGGCGTACAGTGCACCGCCCAGCAACGAGCCGGTGAACCAGCCATAGTCGTAGAACCAGCTGAAACTGCTGTTGCCAATCGCCATTACCGTCAGCCCTACTGGCAAGGCGAAGGCGGCAAAACCGGC  >  NC_002947/4545795‑4546081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.