New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4551231 =	43 (0.950)	3 (0.070)	3/234	NT	6.7%	coding (556/1275 nt)	pydA	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA
	?	NC_002947	4551263 =	43 (1.010)					coding (588/1275 nt)	pydA	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA

GTTGCCCGCACGGTATGCCGGAGCGCGGCATGGGGGCGGCCGTCGGCCAGGTGCCGGAATATGTGGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCGGTTACTGCGGTTCGGCAGT  >  NC_002947/4551082‑4551379                                                                                                                                                      |                                                                                                                                                       tttccgccaccatgttcaaggcaatcggcttcactgccgaaccgcagtaaccgccatgggtgctctggtctccgacgatcgggtgggccaccatgcggtccaggtcgacgctggtgatggagttgatggtgttgatcaacgacacggcat                                                                                                                                                        <  2:531330‑M1/1‑1 (MQ=255)  ttGCCCGCACGGTATGCCGGAGCGCGGCATGGGGGCGGCCGTCGGCCAGGTGCCGGAATATGTGGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTc                                                                                                                                                       >  2:227186/1‑150 (MQ=255)      ncGCACGGTATGCCGGAGCGCGGCATGGGGGCGGCCGTCGGCCAGGTNCCGGAATATGTGGAAATGGTCACCCGCTGGTGCCAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGcc                                                                                                                                                   >  1:293947/2‑150 (MQ=255)      ccGCACGGTATGCCGGAGCGCGGCATGGGGGCGGCCGTCGGCCAGGTGCCGGAATATGTGGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGcc                                                                                                                                                   >  1:1015091/1‑150 (MQ=255)      ccGCACGGTATGCCGGAGCGCGGCATGGGGGCGGCCGTCGGCCAGGTGCCGGAATATGTGGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGcc                                                                                                                                                   >  2:956648/1‑150 (MQ=255)      ccGCACGGTATGCCGGAGCGCGGCATGGGGGCGGCCGTCGGCCAGGTGCCGGAAGATGTGGAAATGGTCACCCGCTGGTGCCAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGcc                                                                                                                                                   >  1:307961/1‑150 (MQ=255)       cGCACGGTATGCCGGAGCGCGGCATGGGGGCGGCCGTCGGCCAGGTGCCGGAATATGTGGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGccc                                                                                                                                                  <  2:898633/150‑1 (MQ=255)                   cGGAGCGCGGCATGGGGGCGGCCGTCGGCCAGGTGCCGGAATATGTGGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑c                                                                                                                                     <  1:247431/150‑1 (MQ=255)                     gAGCGCGGCATGGGGGCGGCCGTCGGCCAGGTGCCGGAATATGTGGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGa                                                                                                                                   <  2:1015091/150‑1 (MQ=255)                         gcgACATGAAGGCGAACGTCGGCCAAGCGCCGGATTAAGTGGAGATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGACGGCACGCGCCGCTCAT‑CCAGGCg                                                                                                                               >  2:318777/1‑150 (MQ=255)                            gCATGGGGGCGGCCGTCGGCCAGGTGCCGGAATATGTGGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCg‑ggg                                                                                                                           <  1:37402/150‑1 (MQ=255)                                    gcggcCGTCGGCCAGGTGCCGGAATATGTGGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGcc                                                                                                                   <  2:492422/150‑1 (MQ=255)                                      ggcCGTCGGCCAGGTGCCGGAATATGTGGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCgt                                                                                                                 <  2:170604/150‑1 (MQ=255)                                         cGTCGGCCAGGTGCCGGAATATGTGGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTc                                                                                                              >  2:1047236/1‑150 (MQ=255)                                           gcGGCCAGGTGCCGGAATATGTGGAAATGGTCACCCCCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATAGCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGt                                                                                                            <  2:293947/149‑1 (MQ=255)                                                cAGGTGCCGGAATATGTGGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATc                                                                                                       <  1:573747/150‑1 (MQ=255)                                                       cGGAATATGTGGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCa                                                                                                >  2:730022/1‑150 (MQ=255)                                                        ggAATATGTGGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCAt                                                                                               >  1:531330/1‑150 (MQ=255)                                                              tgtgGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGACGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTc                                                                                         >  2:875451/1‑150 (MQ=255)                                                                tgGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCa                                                                                       >  2:174505/1‑150 (MQ=255)                                                                tgGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCa                                                                                       >  2:986047/1‑150 (MQ=255)                                                                      tGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCTGCGACTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACAATCAACTCCATCACCa                                                                                 <  1:1051610/150‑1 (MQ=255)                                                                      tGGTCACCCGCTGGTCCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCa                                                                                 <  2:799825/150‑1 (MQ=255)                                                                       ggTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAg                                                                                >  2:328629/1‑150 (MQ=255)                                                                                           cGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCAtgg                                                            <  1:174505/150‑1 (MQ=255)                                                                                                tGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGcc                                                       >  1:694588/1‑150 (MQ=255)                                                                                                  cgcgcTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCa                                                     >  2:182968/1‑150 (MQ=255)                                                                                                       tGCCGGTGATCGTGAAGCTTACGCCGGACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGa                                                >  1:883337/1‑150 (MQ=255)                                                                                                         ccGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGAtc                                              <  1:698306/150‑1 (MQ=255)                                                                                                         ccGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGCCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGGCGTTGAGCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGAtc                                              >  1:18020/1‑150 (MQ=255)                                                                                                          cGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGAtcg                                             >  1:70799/1‑150 (MQ=255)                                                                                                             tGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGc                                                        <  1:765872/136‑1 (MQ=255)                                                                                                             tGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGc                                                        >  2:765872/1‑136 (MQ=255)                                                                                                             tGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGAtcgtcg                                          <  1:227186/150‑1 (MQ=255)                                                                                                               aTCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGga                                        <  1:730022/150‑1 (MQ=255)                                                                                                                  gTGAAGCTTACTCCGAACATCACCGATATCCGCCAGACGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGGCGAACTGGACCGCAGAGTGGCCCACCCGATCGTCGGAGAc                                     >  2:724345/1‑150 (MQ=255)                                                                                                                      aGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCcga                                 <  1:1205095/150‑1 (MQ=255)                                                                                                                         ttACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCAtggtgg                                                         <  1:882928/123‑1 (MQ=255)                                                                                                                         ttACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCAtggtgg                                                         >  2:882928/1‑123 (MQ=255)                                                                                                                         ttACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCa                              >  2:413661/1‑150 (MQ=255)                                                                                                                               cGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCAcc                                                                                  >  1:720397/1‑92 (MQ=255)                                                                                                                               cGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCAcc                                                                                  <  2:720397/92‑1 (MQ=255)                                                                                                                                gAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGAGCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGTCCCACCCGATCGTCGGAGACCAGAGCACCCATgg                       >  2:855542/1‑150 (MQ=255)                                                                                                                                   cATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCgg                    <  1:318777/150‑1 (MQ=255)                                                                                                                                       atcaacgacacggcaTCGGCCC‑CGCCTCG‑ATGCGCGGCGCGGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCg                     >  2:869431‑M1/16‑145 (MQ=255)                                                                                                                                       atcaacgacacggcaTCGGCCC‑CGCCTCG‑ATGCGCGGCGCGGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCg                     <  1:869431‑M1/130‑1 (MQ=255)                                                                                                                                        ccGATAACCGCCAGTCTGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGCTCTCATAACCTTCTGTTTGGCTATCTGCTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCGGTTACt               <  1:1047236/150‑1 (MQ=255)                                                                                                                                                acggcaTCGGCCC‑CGCCTCG‑ATGCGCGGCGCGGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCGGTTACTGCGGTTCg       <  1:683176‑M1/144‑1 (MQ=255)                                                                                                                                                 gCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCGTCTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCGGTTACTGCGGTTCgg      <  1:724345/150‑1 (MQ=255)                                                                                                                                                   cAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCGGTTACTGCGGTTCGGCa    <  1:182968/150‑1 (MQ=255)                                                                                                                                                     gTCGGCCGGCGTCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCGGTTACTGCGGTTCGGCAGt  <  1:956648/150‑1 (MQ=255)                                                                                                                                                     gTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCAt                         >  1:231739/1‑127 (MQ=255)                                                                                                                                                     gTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCAt                         <  2:231739/127‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                       GTTGCCCGCACGGTATGCCGGAGCGCGGCATGGGGGCGGCCGTCGGCCAGGTGCCGGAATATGTGGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCGGTTACTGCGGTTCGGCAGT  >  NC_002947/4551082‑4551379

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.