New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4551231 =	43 (0.950)	3 (0.070)	3/234	NT	6.7%	coding (556/1275 nt)	pydA	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA
	?	NC_002947	4551263 =	43 (1.010)					coding (588/1275 nt)	pydA	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA

GCGGCCGTCGGCCAGGTGCCGGAATATGTGGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCGGTTACTGCGGTTCGGCAGTGAAGCCGATTGCCTTGAACATGGTGGCGGAAA  >  NC_002947/4551117‑4551411                                                                                                                                                     |                                                                                                                                                     gcggcCGTCGGCCAGGTGCCGGAATATGTGGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGcc                                                                                                                                                   <  2:492422/150‑1 (MQ=255)   ggcCGTCGGCCAGGTGCCGGAATATGTGGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCgt                                                                                                                                                 <  2:170604/150‑1 (MQ=255)     cgaaccgcagtaaccgccatgggtgctctggtctccgacgatcgggtgggccaccatgcggtccaggtcgacgctggtgatggagttgatggtgttgatcaacgacacggcatcggcccgcgccgcgcatcgaggcggggccgaTGCCgt                                                                                                                                                 <  1:683176‑M2/6‑1 (MQ=255)      cGTCGGCCAGGTGCCGGAATATGTGGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTc                                                                                                                                              >  2:1047236/1‑150 (MQ=255)        gcGGCCAGGTGCCGGAATATGTGGAAATGGTCACCCCCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATAGCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGt                                                                                                                                            <  2:293947/149‑1 (MQ=255)             cAGGTGCCGGAATATGTGGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATc                                                                                                                                       <  1:573747/150‑1 (MQ=255)                   cgccatgggtgctctggtctccgacgatcgggtgggccaccatgcggtccaggtcgacgctggtgatggagttgatggtgttgatcaacgacacggcatcggcccgcgccgcgcatcgaggcggggccgaTGCCGTGTCGTTGAt                                                                                                                                        >  2:869431‑M2/131‑145 (MQ=255)                   cgccatgggtgctctggtctccgacgatcgggtgggccaccatgcggtccaggtcgacgctggtgatggagttgatggtgttgatcaacgacacggcatcggcccgcgccgcgcatcgaggcggggccgaTGCCGTGTCGTTGAt                                                                                                                                        <  1:869431‑M2/15‑1 (MQ=255)                    cGGAATATGTGGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCa                                                                                                                                >  2:730022/1‑150 (MQ=255)                     ggAATATGTGGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCAt                                                                                                                               >  1:531330/1‑150 (MQ=255)                           tgtgGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGACGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTc                                                                                                                         >  2:875451/1‑150 (MQ=255)                             tgGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCa                                                                                                                       >  2:986047/1‑150 (MQ=255)                             tgGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCa                                                                                                                       >  2:174505/1‑150 (MQ=255)                                   tGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCTGCGACTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACAATCAACTCCATCACCa                                                                                                                 <  1:1051610/150‑1 (MQ=255)                                   tGGTCACCCGCTGGTCCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCa                                                                                                                 <  2:799825/150‑1 (MQ=255)                                    ggTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAg                                                                                                                >  2:328629/1‑150 (MQ=255)                                                        cGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCAtgg                                                                                            <  1:174505/150‑1 (MQ=255)                                                             tGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGcc                                                                                       >  1:694588/1‑150 (MQ=255)                                                               cgcgcTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCa                                                                                     >  2:182968/1‑150 (MQ=255)                                                                    tGCCGGTGATCGTGAAGCTTACGCCGGACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGa                                                                                >  1:883337/1‑150 (MQ=255)                                                                      ccGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGAtc                                                                              <  1:698306/150‑1 (MQ=255)                                                                      ccGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGCCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGGCGTTGAGCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGAtc                                                                              >  1:18020/1‑150 (MQ=255)                                                                       cGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGAtcg                                                                             >  1:70799/1‑150 (MQ=255)                                                                          tGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGc                                                                                        <  1:765872/136‑1 (MQ=255)                                                                          tGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGc                                                                                        >  2:765872/1‑136 (MQ=255)                                                                          tGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGAtcgtcg                                                                          <  1:227186/150‑1 (MQ=255)                                                                            aTCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGga                                                                        <  1:730022/150‑1 (MQ=255)                                                                               gTGAAGCTTACTCCGAACATCACCGATATCCGCCAGACGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGGCGAACTGGACCGCAGAGTGGCCCACCCGATCGTCGGAGAc                                                                     >  2:724345/1‑150 (MQ=255)                                                                                   aGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCcga                                                                 <  1:1205095/150‑1 (MQ=255)                                                                                      ttACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCAtggtgg                                                                                         <  1:882928/123‑1 (MQ=255)                                                                                      ttACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCAtggtgg                                                                                         >  2:882928/1‑123 (MQ=255)                                                                                      ttACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCa                                                              >  2:413661/1‑150 (MQ=255)                                                                                            cGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCAcc                                                                                                                  <  2:720397/92‑1 (MQ=255)                                                                                            cGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCAcc                                                                                                                  >  1:720397/1‑92 (MQ=255)                                                                                             gAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGAGCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGTCCCACCCGATCGTCGGAGACCAGAGCACCCATgg                                                       >  2:855542/1‑150 (MQ=255)                                                                                                cATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCgg                                                    <  1:318777/150‑1 (MQ=255)                                                                                                    atcaacgacacggcaTCGGCCC‑CGCCTCG‑ATGCGCGGCGCGGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCg                                                     <  1:869431‑M1/130‑1 (MQ=255)                                                                                                    atcaacgacacggcaTCGGCCC‑CGCCTCG‑ATGCGCGGCGCGGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCg                                                     >  2:869431‑M1/16‑145 (MQ=255)                                                                                                     ccGATAACCGCCAGTCTGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGCTCTCATAACCTTCTGTTTGGCTATCTGCTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCGGTTACt                                               <  1:1047236/150‑1 (MQ=255)                                                                                                             acggcaTCGGCCC‑CGCCTCG‑ATGCGCGGCGCGGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCGGTTACTGCGGTTCg                                       <  1:683176‑M1/144‑1 (MQ=255)                                                                                                              gCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCGTCTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCGGTTACTGCGGTTCgg                                      <  1:724345/150‑1 (MQ=255)                                                                                                                cAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCGGTTACTGCGGTTCGGCa                                    <  1:182968/150‑1 (MQ=255)                                                                                                                  gTCGGCCGGCGTCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCGGTTACTGCGGTTCGGCAGt                                  <  1:956648/150‑1 (MQ=255)                                                                                                                  gTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCAt                                                         <  2:231739/127‑1 (MQ=255)                                                                                                                  gTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCAt                                                         >  1:231739/1‑127 (MQ=255)                                                                                                                        CCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGAACGCATGGTGGCCCACACGGTCCCCTAAGACCGGAGCACCCATGGCGGTTACTGCGGTTCGGCAGTGAAGcc                            >  1:328629‑M1/1‑150 (MQ=255)                                                                                                                             ccgcgcAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCAGTGCTTTGCACCCGATCGTCGGAGACCAGAGACCACATGGAGGTAACGGCGGTGCGGTAGTGAAGCCGATTg                       >  1:928544/1‑150 (MQ=255)                                                                                                                                cgcAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCGGTTACTGCGGTTCGGCAGTGAAGCCGATTGCCt                    <  2:883337/150‑1 (MQ=255)                                                                                                                                 gcAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGc                                                                                        <  1:783136/81‑1 (MQ=255)                                                                                                                                 gcAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAACGTCGACCTGGACCGCATGGTGGc                                                                                        >  2:783136/1‑81 (MQ=255)                                                                                                                                    t‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCGGTTACTGCGGTTCGGCAGTGAAGCCGATTGCCTTGaa                <  2:70799/150‑1 (MQ=255)                                                                                                                                        aGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCg                                                     <  2:411046/110‑1 (MQ=255)                                                                                                                                        aGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCg                                                     >  1:411046/1‑110 (MQ=255)                                                                                                                                          gCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCCCCCGATCGTCGGAGACCAGAGCACCCATGGCGGTTACTGCGGTTCGGCAGTGAAGCCGATTGCCTTGAACAtgg           >  2:887131/1‑150 (MQ=255)                                                                                                                                          gCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCGGTTACTGCGGTTCGGCAGTGAAGCCGATTGCCTTGAACAtgg           <  1:413661/150‑1 (MQ=255)                                                                                                                                            g‑gggCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCGGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCGGTTACTGCGGTTCGGCAGTGAAGCCGATTGCCTTGAACAtggtg         <  1:131763/150‑1 (MQ=255)                                                                                                                                                    aTGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCGGTTACTGCGGTTCGGCAGTGAAGCCGATTGCCTTGAACATGGTGGCGGaaa  <  2:531330‑M2/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GCGGCCGTCGGCCAGGTGCCGGAATATGTGGAAATGGTCACCCGCTGGTGCAAGACGTACTGCGCGCTGCCGGTGATCGTGAAGCTTACGCCGAACATCACCGATATCCGCCAGTCGGCCCGCGCCGCGCAT‑CGAGGCG‑GGGCCGATGCCGTGTCGTTGATCAACACCATCAACTCCATCACCAGCGTCGACCTGGACCGCATGGTGGCCCACCCGATCGTCGGAGACCAGAGCACCCATGGCGGTTACTGCGGTTCGGCAGTGAAGCCGATTGCCTTGAACATGGTGGCGGAAA  >  NC_002947/4551117‑4551411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.