New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4635686 =	38 (0.840)	3 (0.070)	3/236	NT	8.0%	coding (116/639 nt)	uvrY	BarA/UvrY two‑componenent system response regulator
	?	NC_002947	4635739 =	33 (0.770)					coding (63/639 nt)	uvrY	BarA/UvrY two‑componenent system response regulator

GGGTCTTCCTCGCACACCGTCACCGCCACTACCTTGATGTCAGGGTGGCTGCGCAGCAGTTTGCGGGTGGCCTCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATACCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACAC  >  NC_002947/4635539‑4635809                                                                                                                                                     |                                                                                                                            gggTCTTCCTCGCACACCGTCACCGCCACTACCTTGATGTCAGGGTGGCTGCGCAGCAGTTTGCGGGGGGCCTCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGcc                                                                                                                           <  2:1075447/150‑1 (MQ=255)    gaaggaagcaatgcgttaggcccaccgtgaaaaattttgttaaggtggcgggatccaatcgccctgctgacgaggtgtgtgcttgattagggtcttagtggtcgatgatcacgatctggtacgaaccggtattacacggatgttgGCCGa                                                                                                                         >  2:732226‑M1/146‑150 (MQ=255)          tCGCACACCGTCACCGCCACTACCTTGATGTCAGGGTGGCTGCGCAGCAGTTTGCGGGGGGCCTCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCg                                                                                                                  >  2:713527/1‑150 (MQ=255)              acacCGTCACCGCCACTACCTTGATGTCAGGGTGGCTGCGCAGCAGTTTGCGGGGGGCCTCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAAt                                                                                                              >  1:262051/1‑150 (MQ=255)              acacCGTCACCGCCACTACCTTGATGTCAGGGTGGCTGCGCAGCAGTTTGCGGGGGGCCTCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAAt                                                                                                              <  2:427553/150‑1 (MQ=255)                    tCACCGCCACTACCTTGATGTCAGGGTGGCTGCGCAGCAGTTTGCGGGGGGCCTCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCt                                                                                                        <  2:39270/150‑1 (MQ=255)                      aCCGCCACTACCTTGATGTCAGGGTGGCTGCGCAGCAGTTTGCGGGGGGCCTCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTca                                                                                                      >  1:1160857/1‑150 (MQ=255)                        caccACGACCTTGAGGTCAGGGTGGCTGCGCAGCAGTTTGCGGGGGGCCTCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTcacc                                                                                                    <  2:1160857/148‑1 (MQ=255)                         gCCACTACCTTGATGTCAGGGTGGCTGCGCAGCAGTTTGCGGGGGGCCTCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTcaccc                                                                                                   >  2:981295/1‑150 (MQ=255)                              tACCTTGATGTCAGGGTGGCTGCGCAGCAGTTTGCGGGGGGCCTCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGAGCCAGTTTCAGTGCCGACTCGCCGGAAGCTCCCTCACCcaccac                                                                                              <  2:277543/150‑1 (MQ=255)                                 cTTGATGTCAGGGTGGCTGCGCAGCAGTTTGCGGGGGGCCTCCAG‑GCCGCCGATGCCGGGTATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTg                                                                                           >  1:429443/1‑150 (MQ=255)                                   tGATGTCAGGGTGGCTGCGCAGCAGTTTGCGGGGGGCCTCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCa                                                                                         <  1:981295/150‑1 (MQ=255)                                    gATGTCAGGGTGGCTGCGCAGCAGTTTGCGGGGGGCCTCCAGCACCGCC‑AGCCCCGTCGTTGTCACATCCATCAGCAGAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAg                                                                                        <  1:871420/150‑1 (MQ=255)                                        tCAGGGTGGCTGCGCAGCAGTTTGCGGGGGGCCTCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCg                                                                                    >  1:41151/1‑150 (MQ=255)                                                  tGCGCAGCAGTTTGCGGGGGGCCTCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCgg                                                                          <  1:809334/150‑1 (MQ=255)                                                      cagcagTTTGCGGGGGGCCTCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCaa                                                                      >  1:1039941/1‑150 (MQ=255)                                                          ccaatcgccctgctgacgaggtgtgtgcttgattagggtcttagtggtcgatgatcacgatctggtacgaaccggtattacacggatgttgGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACAt                                                                   >  1:1110990‑M1/92‑150 (MQ=255)                                                            tttGCGGGGGGCCTCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGt                                                                             >  2:690416/1‑137 (MQ=255)                                                            tttGCGGGGGGCCTCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGt                                                                             <  1:690416/137‑1 (MQ=255)                                                             ttGCGGGGGGCCTCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCgt                                                               <  1:713527/150‑1 (MQ=255)                                                             ttGCGGGGGGCCTCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCgt                                                               <  1:996747/150‑1 (MQ=255)                                                             ttGCGGGGGGCCTCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCgt                                                               <  2:624902/150‑1 (MQ=255)                                                                 ggggggCCTCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTaa                                                           >  1:522752/1‑150 (MQ=255)                                                                    gggCCTCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATAc                                                        <  2:262051/149‑1 (MQ=255)                                                                        cTCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATACCGGt                                                    >  1:961324/1‑150 (MQ=255)                                                                        cTCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATACCGGt                                                    >  2:1145631/1‑150 (MQ=255)                                                                         tCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATACCGGtt                                                   <  1:679985/150‑1 (MQ=255)                                                                         tCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATACCGGtt                                                   <  2:41151/150‑1 (MQ=255)                                                                          ccAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATACCGGTTc                                                  <  2:961324/150‑1 (MQ=255)                                                                            aG‑GTCGCCGATGCCGGTCATTTTCACATCCATCAGCACGACGGCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATACTGGTTCGt                                                <  2:851022/150‑1 (MQ=255)                                                                                            ggCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATACCGGTTc                                                  <  1:663168/133‑1 (MQ=255)                                                                                            ggCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATACCGGTTc                                                  >  2:663168/1‑133 (MQ=255)                                                                                                tcttagtggtcgatgatcacgatctggtacgaaccggtattacacggatgttgGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCgg                                                                          >  2:527887‑M1/54‑105 (MQ=255)                                                                                                tcttagtggtcgatgatcacgatctggtacgaaccggtattacacggatgttgGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCgg                                                                          <  1:527887‑M1/52‑1 (MQ=255)                                                                                                       atccatcAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATACCGGTTCGTACCAGATCGTGATCATCGACCACTaa                      <  2:429443/150‑1 (MQ=255)                                                                                                         ccatcAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCgt                                                               >  2:970971/1‑107 (MQ=255)                                                                                                         ccatcAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCgt                                                               <  1:970971/107‑1 (MQ=255)                                                                                                                 acaACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATACCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATc            <  2:522752/150‑1 (MQ=255)                                                                                                                    aCGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTTCCTCCCCCACCACCTGCAGGCCCTCGATGTCGGCCCACATCCGCGTAATACCGGTCCGTACCAGATCGTTATCATCGACCACTAAGACCCTAATCAAg         <  2:563845/150‑1 (MQ=255)                                                                                                                    aCGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATACCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAg         <  2:1039941/150‑1 (MQ=255)                                                                                                                           gTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATACCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCacacac  <  1:1145631/150‑1 (MQ=255)                                                                                                                                         gCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATACCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCacacac  <  2:568317/136‑1 (MQ=255)                                                                                                                                         gCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATACCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCacacac  >  1:568317/1‑136 (MQ=255)                                                                                                                                                     |                                                                                                                            GGGTCTTCCTCGCACACCGTCACCGCCACTACCTTGATGTCAGGGTGGCTGCGCAGCAGTTTGCGGGTGGCCTCCAG‑GCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATACCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACAC  >  NC_002947/4635539‑4635809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.