New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5346421	45 (1.000)	3 (0.070)	3/232	NT	6.4%	coding (1771/1935 nt)	acsA‑II	acetyl‑CoA synthetase
	?	NC_002947	= 5346454	46 (1.090)					coding (1804/1935 nt)	acsA‑II	acetyl‑CoA synthetase

CTACCCCCACGACCTCAAGGGCCAAGGCGTCTACGCCTTCGTCACGACCATGAATGGCGTGACACCAGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAA  >  NC_002947/5346285‑5346570                                                                                                                                         |                                                                                                                                                      cTACCCCCACGACCTCAAGGGCCAAGGCGTCTACGCCTTCGTCACGACCATGAATGGCGTGACACCAGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGgc                                                                                                                                          <  2:809773/150‑1 (MQ=255)     ccccACGACCTCAAGGGCCAAGGCGTCTACGCCTTCGTCACGACCATGAATGGCGTGACACCAGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCa                                                                                                                                      <  2:124383/150‑1 (MQ=255)       ccACGACCTCAAGGGCCAAGGCGTCTACGCCTTCGTCACGACCATGAATGGCGTGACACCAGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAgc                                                                                                                                    >  1:325394/1‑150 (MQ=255)               tCAAGGGCCAAGGCGTCTACGCCTTCGTCACGACCATGAATGGCGTGACACCAGATGACACTCTCAAGGCCGAGCTGCCGGTCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGACGCAGTGTGCGCCAGCGCTACCCa                                                                                                                            >  1:327083/1‑150 (MQ=255)                    ggCCAAGGCGTCTACGCCTTCGTCATGACCATGAATGGCCTGACACCAGATGACACGCTCAAGGCCGAGCTGCTGGCCTTGGTCAGCAAGGAAATCGGCAGCTCCCCAAAGCCTGAGCTGATTCAGTGGGCGCAAGCGCTACCCAAGAcg                                                                                                                       <  2:233430/150‑1 (MQ=255)                      cgaaggCGTAGACGCCTTCGTCAGGACCATGAATGGCGTGACACCAGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGACTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCg                                                                                                                     <  2:72294‑M2/148‑2 (MQ=255)                             gTCTACGCCTTCGTCACGACCATGAATGGCGTGACACCAGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCgctcaggc                                                                                                              >  2:796046‑M2/1‑142 (MQ=255)                                 aCGCCTTCGTCACGACCATGAATGGCGTGACACCAGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCgcgtcttgggtagcgctggcgcccactgaatcagctcaggcttgg                                                                                                          <  2:106100‑M1/150‑46 (MQ=255)                                     cTTCGTCACGACCATGAATGGCGTGACACCAGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCAt                                                                                                      <  2:325394/150‑1 (MQ=255)                                                 cATGAATGGCGTGACACCAGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACt                                                                                          >  2:1081187/1‑150 (MQ=255)                                                 cATGAATGGCGTGACACCAGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACt                                                                                          >  1:648339/1‑150 (MQ=255)                                                                  cAGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCa                                                                                                                                      >  2:783505/1‑89 (MQ=255)                                                                  cAGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCa                                                                                                                                      <  1:783505/89‑1 (MQ=255)                                                                  cAGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATc                                                                                                        <  1:56877/119‑1 (MQ=255)                                                                  cAGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATc                                                                                                        >  2:56877/1‑119 (MQ=255)                                                                  cAGATGACACGCTCAAGGCCGAGATGCAGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCa                                                                         >  1:338171/1‑150 (MQ=255)                                                                   aGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCACCTTATACTGCGCAAAATCGCCTGCaa                                                                        >  1:642/1‑150 (MQ=255)                                                                     aTGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCaa                                                                                                            >  2:288098/1‑112 (MQ=255)                                                                     aTGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCaa                                                                                                            <  1:288098/112‑1 (MQ=255)                                                                          acGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGta                                                                                              <  2:954986/121‑1 (MQ=255)                                                                          acGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGta                                                                                              >  1:954986/1‑121 (MQ=255)                                                                            gCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGa                                                               >  2:1167160/1‑150 (MQ=255)                                                                            gCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGa                                                               >  2:622134/1‑150 (MQ=255)                                                                              tCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCACGCATGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCACTGAGCTGGaaa                                                             >  2:295897/1‑150 (MQ=255)                                                                               cAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTc                                                                                                                                                 >  1:895507/1‑65 (MQ=255)                                                                               cAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTc                                                                                                                                                 <  2:895507/65‑1 (MQ=255)                                                                               cAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGaaaa                                                            <  2:14007/150‑1 (MQ=255)                                                                                  ggCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCt                                                         >  1:91758/1‑150 (MQ=255)                                                                                    ccGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTgg                                                       >  1:251898/1‑150 (MQ=255)                                                                                      gAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGACTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGc                                                     <  1:72294/150‑1 (MQ=255)                                                                                           gctgGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATAc                                                >  1:65890/1‑150 (MQ=255)                                                                                                cccTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGa                                           <  1:994245/150‑1 (MQ=255)                                                                                                  cTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGATGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGAcc                                         <  1:198128/150‑1 (MQ=255)                                                                                                          cAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGa                                 >  1:879885/1‑150 (MQ=255)                                                                                                           aaGGAAATCGGCAGCTTCGCCAAGCCTGAGCgcgtcttgggtagcgctggcgcccactgaatcagctcag                                                                                                                >  1:1157907‑M1/1‑31 (MQ=255)                                                                                                           aaGGAAATCGGCAGCTTCGCCAAGCCTGAGCgcgtcttgggtagcgctggcgcccactgaatcagctcag                                                                                                                <  2:1157907‑M1/70‑40 (MQ=255)                                                                                                           aaGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTgg                                                       >  2:885660/1‑127 (MQ=255)                                                                                                           aaGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTgg                                                       <  1:885660/127‑1 (MQ=255)                                                                                                            aGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACGCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGAcc                               >  2:803053/1‑150 (MQ=255)                                                                                                               aaaTCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGa                            <  2:327083/150‑1 (MQ=255)                                                                                                                aaTCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGAc                                <  2:173985/145‑1 (MQ=255)                                                                                                                aaTCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGAc                                >  1:173985/1‑145 (MQ=255)                                                                                                                  tCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCg                         >  2:970605/1‑150 (MQ=255)                                                                                                                     gCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTgg                      <  2:65890/150‑1 (MQ=255)                                                                                                                        gCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGATGATCGCGCAGGGGCGGCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTAc                   >  1:749054/1‑150 (MQ=255)                                                                                                                         cTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACa                  >  1:880247/1‑150 (MQ=255)                                                                                                                           tCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAgg                <  1:622134/150‑1 (MQ=255)                                                                                                                            cGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAggg               <  2:338171/150‑1 (MQ=255)                                                                                                                             gCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGc              >  2:372462/1‑150 (MQ=255)                                                                                                                              ccAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCgctcaggcttggcgaagctgccgatttccttgctgaccagggccagcagctcggccttgagcgtgtcatctggtgtcacgccattcatggtcgtgacgaaggcgt             <  2:106100‑M2/150‑106 (MQ=255)                                                                                                                              ccAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGcc             <  2:786005/150‑1 (MQ=255)                                                                                                                                  gCCTGAGCgcgtcttgggtagcgctggcgcccactgaatcagctcaggcttggcgaagctgccgatttccttgctgaccagggccagcagctcggccttgagcgtgtcatctggtgtcacgccattcatggtcgtgacgaaggcgtagac         >  2:796046‑M1/1‑8 (MQ=255)                                                                                                                                    cTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCgctcaggcttggcgaagctgccgatttcctt                                                                                       <  2:1157907‑M2/70‑32 (MQ=255)                                                                                                                                    cTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCgctcaggcttggcgaagctgccgatttcctt                                                                                       >  1:1157907‑M2/1‑39 (MQ=255)                                                                                                                                     tGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGa      <  2:642/150‑1 (MQ=255)                                                                                                                                       aGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACa    >  1:355915/1‑150 (MQ=255)                                                                                                                                         cgcgtcttgggtagcgctggcgcccactgaatcagctcagtcttggcgaagctgccgatttccttgctgaccagggccagcagctcggccttgagcgtgtcatctggtgtcacgccattcatggtcctgacgaaggcgtctacgccttcg  <  2:72294‑M1/150‑150 (MQ=255)                                                                                                                                         |                                                                                                                                                      CTACCCCCACGACCTCAAGGGCCAAGGCGTCTACGCCTTCGTCACGACCATGAATGGCGTGACACCAGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAA  >  NC_002947/5346285‑5346570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.