New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5346421	45 (1.000)	3 (0.070)	3/232	NT	6.4%	coding (1771/1935 nt)	acsA‑II	acetyl‑CoA synthetase
	?	NC_002947	= 5346454	46 (1.090)					coding (1804/1935 nt)	acsA‑II	acetyl‑CoA synthetase

CCAAGGCGTCTACGCCTTCGTCACGACCATGAATGGCGTGACACCAGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGC  >  NC_002947/5346306‑5346596                                                                                                                                                     |                                                                                                                                               cgaaggCGTAGACGCCTTCGTCAGGACCATGAATGGCGTGACACCAGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGACTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCg                                                                                                                                               <  2:72294‑M2/148‑2 (MQ=255)        gTCTACGCCTTCGTCACGACCATGAATGGCGTGACACCAGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCgctcaggc                                                                                                                                        >  2:796046‑M2/1‑142 (MQ=255)                cTTCGTCACGACCATGAATGGCGTGACACCAGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCAt                                                                                                                                <  2:325394/150‑1 (MQ=255)                            cATGAATGGCGTGACACCAGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACt                                                                                                                    >  2:1081187/1‑150 (MQ=255)                            cATGAATGGCGTGACACCAGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACt                                                                                                                    >  1:648339/1‑150 (MQ=255)                                             cAGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATc                                                                                                                                  >  2:56877/1‑119 (MQ=255)                                             cAGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATc                                                                                                                                  <  1:56877/119‑1 (MQ=255)                                             cAGATGACACGCTCAAGGCCGAGATGCAGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCa                                                                                                   >  1:338171/1‑150 (MQ=255)                                              aGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCACCTTATACTGCGCAAAATCGCCTGCaa                                                                                                  >  1:642/1‑150 (MQ=255)                                                aTGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCaa                                                                                                                                      >  2:288098/1‑112 (MQ=255)                                                aTGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCaa                                                                                                                                      <  1:288098/112‑1 (MQ=255)                                                     acGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGta                                                                                                                        <  2:954986/121‑1 (MQ=255)                                                     acGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGta                                                                                                                        >  1:954986/1‑121 (MQ=255)                                                       gCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGa                                                                                         >  2:1167160/1‑150 (MQ=255)                                                       gCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGa                                                                                         >  2:622134/1‑150 (MQ=255)                                                         tCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCACGCATGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCACTGAGCTGGaaa                                                                                       >  2:295897/1‑150 (MQ=255)                                                          cAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGaaaa                                                                                      <  2:14007/150‑1 (MQ=255)                                                             ggCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCt                                                                                   >  1:91758/1‑150 (MQ=255)                                                               ccGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTgg                                                                                 >  1:251898/1‑150 (MQ=255)                                                                 gAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGACTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGc                                                                               <  1:72294/150‑1 (MQ=255)                                                                      gctgGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATAc                                                                          >  1:65890/1‑150 (MQ=255)                                                                           cccTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGa                                                                     <  1:994245/150‑1 (MQ=255)                                                                             cTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGATGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGAcc                                                                   <  1:198128/150‑1 (MQ=255)                                                                                     cAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGa                                                           >  1:879885/1‑150 (MQ=255)                                                                                      aaGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTgg                                                                                 <  1:885660/127‑1 (MQ=255)                                                                                      aaGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTgg                                                                                 >  2:885660/1‑127 (MQ=255)                                                                                       aGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACGCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGAcc                                                         >  2:803053/1‑150 (MQ=255)                                                                                          aaaTCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGa                                                      <  2:327083/150‑1 (MQ=255)                                                                                           aaTCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGAc                                                          >  1:173985/1‑145 (MQ=255)                                                                                           aaTCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGAc                                                          <  2:173985/145‑1 (MQ=255)                                                                                             tCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCg                                                   >  2:970605/1‑150 (MQ=255)                                                                                                gCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTgg                                                <  2:65890/150‑1 (MQ=255)                                                                                                   gCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGATGATCGCGCAGGGGCGGCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTAc                                             >  1:749054/1‑150 (MQ=255)                                                                                                    cTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACa                                            >  1:880247/1‑150 (MQ=255)                                                                                                      tCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAgg                                          <  1:622134/150‑1 (MQ=255)                                                                                                       cGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAggg                                         <  2:338171/150‑1 (MQ=255)                                                                                                        gCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGc                                        >  2:372462/1‑150 (MQ=255)                                                                                                         ccAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCgctcaggcttggcgaagctgccgatttccttgctgaccagggccagcagctcggccttgagcgtgtcatctggtgtcacgccattcatggtcgtgacgaaggcgt                                       <  2:106100‑M2/150‑106 (MQ=255)                                                                                                         ccAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGcc                                       <  2:786005/150‑1 (MQ=255)                                                                                                               cTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCgctcaggcttggcgaagctgccgatttcctt                                                                                                                 <  2:1157907‑M2/70‑32 (MQ=255)                                                                                                               cTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCgctcaggcttggcgaagctgccgatttcctt                                                                                                                 >  1:1157907‑M2/1‑39 (MQ=255)                                                                                                                tGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGa                                <  2:642/150‑1 (MQ=255)                                                                                                                  aGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACa                              >  1:355915/1‑150 (MQ=255)                                                                                                                            gTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCaa                    <  1:1167160/150‑1 (MQ=255)                                                                                                                             tGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAAc                   >  2:1005484/1‑150 (MQ=255)                                                                                                                               ggCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCa                 <  1:372462/150‑1 (MQ=255)                                                                                                                               ggCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCa                 >  2:1191540/1‑150 (MQ=255)                                                                                                                                        gcTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTg                                                                >  1:725268/1‑94 (MQ=255)                                                                                                                                        gcTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTg                                                                <  2:725268/94‑1 (MQ=255)                                                                                                                                            cccAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAg                >  2:1117871/1‑138 (MQ=255)                                                                                                                                            cccAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAg                <  1:1117871/138‑1 (MQ=255)                                                                                                                                            cccAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCGCAACCAGTAACCGGCGGcc    >  2:794589/1‑150 (MQ=255)                                                                                                                                              cAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGc  >  2:802986/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                               CCAAGGCGTCTACGCCTTCGTCACGACCATGAATGGCGTGACACCAGATGACACGCTCAAGGCCGAGCTGCTGGCCCTGGTCAGCAAGGAAATCGGCAGCTTCGCCAAGCCTGAGCTGATTCAGTGGGCGCCAGCGCTACCCAAGACGCGCTCAGGCAAGATCATGCGGCGTATACTGCGCAAAATCGCCTGCAATGAGCTGGAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGC  >  NC_002947/5346306‑5346596

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.