| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5383200 = | 41 (0.910) | 3 (0.070) | 3/240 | NT | 6.8% | coding (129/768 nt) | pdhR | DNA‑binding transcriptional regulator LldR |
| ? | NC_002947 | 5383230 = | 43 (0.980) | coding (99/768 nt) | pdhR | DNA‑binding transcriptional regulator LldR | |||||
CTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAAC > NC_002947/5383051‑5383346 | cgagaataggcaccccctgaaatttgccgggggtttgtggagagcatgtgatggtttttgatcaggtacgccaacggcgcctgtccgacgacattgtcgatcggctggaagggatgattctggaaggcacgctgacctcggggcagcggc > 1:1042480‑M1/150‑150 (MQ=255) gagaataggcaccccctgaaatttgccgggggtttgtggagagcatgtgatggtttttgatcaggtacgccaacggcgcctgtccgacgacattgtcgatcggctggaagggatgattctggaaggcacgctgacctcggggcagcggct < 2:378597‑M1/2‑1 (MQ=255) gAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGc < 1:725723/150‑1 (MQ=255) aaCGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTcg > 1:287245/1‑150 (MQ=255) gTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTcggccgg < 2:108355/150‑1 (MQ=255) gAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCg > 2:1134299/1‑150 (MQ=255) gtggagagcatgtgatggtttttgatcaggtacgccaacggcgcctgtccgacgacattgtcgatcggctggaagggatgattctggaaggcacgctgacctcggggcagcggCTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGc > 1:378597‑M1/114‑150 (MQ=255) gTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTTACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGc < 1:69664/150‑1 (MQ=255) gTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGc > 2:837230/1‑150 (MQ=255) tGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCAGCAGCCGCTGcc < 2:922830/150‑1 (MQ=255) gACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACGTGGTGCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGcccc < 1:74931/150‑1 (MQ=255) cccAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCgtg < 1:598156/150‑3 (MQ=255) cAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGt > 2:950444/1‑150 (MQ=255) aCGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCa < 2:287245/150‑1 (MQ=255) cGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAg < 2:318683/150‑1 (MQ=255) gACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGc < 1:837230/150‑1 (MQ=255) ccGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGc < 1:950444/150‑1 (MQ=255) cGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACACCGTGAGGGGCGGGACACACCAAAATGCTAAAAATCGACGCTCGCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGcc > 1:570055/1‑150 (MQ=255) aaaTTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGa < 1:1019399/150‑1 (MQ=255) ttGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCa > 2:722203/1‑145 (MQ=255) ttGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCa < 1:722203/145‑1 (MQ=255) cccGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGGTCGCCTCACGCAGTGACGGGGGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATccc > 1:507340/1‑150 (MQ=255) ggCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACAAACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGACGAt > 2:848676/1‑150 (MQ=255) tGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGa > 2:910440/1‑150 (MQ=255) taCCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGAc > 1:1098395/2‑150 (MQ=255) cagcagCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAAt < 1:580244/150‑1 (MQ=255) cagcagCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAAt < 1:558484/150‑1 (MQ=255) ccccTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATgtcgtc > 1:548939/1‑150 (MQ=255) cTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGa < 1:554316/150‑1 (MQ=255) cTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGa > 2:554316/1‑150 (MQ=255) atcggctggaagggatgattctggaaggcacgctgacctcggggcagcggCTGCTCGGCCAGGACGCGCTCGGCCGGCAg > 1:348138‑M1/51‑80 (MQ=255) atcggctggaagggatgattctggaaggcacgctgacctcggggcagcggCTGCTCGGCCAGGACGCGCTCGGCCGGCAg < 2:348138‑M1/30‑1 (MQ=255) caccaGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACa > 1:637813/1‑146 (MQ=255) caccaGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACa < 2:637813/146‑1 (MQ=255) tCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGc < 1:407913/150‑1 (MQ=255) tCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCt > 1:713803/1‑150 (MQ=255) ccTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGCGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGTACAGGCGCCGTTGGCGTACCTGAt > 2:665533/1‑150 (MQ=255) tCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGc > 1:633001/1‑139 (MQ=255) tCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGc < 2:633001/139‑1 (MQ=255) tGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCAt < 1:406081/150‑1 (MQ=255) aCGGGCGGGACAAACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGACGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATca < 1:848676/150‑1 (MQ=255) acacacCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCtctc < 1:910440/150‑1 (MQ=255) cacacCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTcc > 1:641589/1‑150 (MQ=255) acacCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCca < 2:548939/150‑1 (MQ=255) acacCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCca < 2:1098395/150‑1 (MQ=255) cacCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGACGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCcac > 1:258965/1‑150 (MQ=255) ccAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAAc > 1:339458/1‑131 (MQ=255) ccAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCGTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAAc < 2:339458/131‑1 (MQ=255) aaaCTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAAc < 2:570055/150‑1 (MQ=255) | CTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAAC > NC_002947/5383051‑5383346 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |