New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5383200 =	41 (0.910)	3 (0.070)	3/240	NT	6.8%	coding (129/768 nt)	pdhR	DNA‑binding transcriptional regulator LldR
	?	NC_002947	5383230 =	43 (0.980)					coding (99/768 nt)	pdhR	DNA‑binding transcriptional regulator LldR

GAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGC  >  NC_002947/5383083‑5383379                                                                                                                                                    |                                                                                                                                                      gAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCg                                                                                                                                                     >  2:1134299/1‑150 (MQ=255)     gtggagagcatgtgatggtttttgatcaggtacgccaacggcgcctgtccgacgacattgtcgatcggctggaagggatgattctggaaggcacgctgacctcggggcagcggCTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGc                                                                                                                                                 >  1:378597‑M1/114‑150 (MQ=255)     gTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTTACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGc                                                                                                                                                 <  1:69664/150‑1 (MQ=255)     gTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGc                                                                                                                                                 >  2:837230/1‑150 (MQ=255)      tGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCAGCAGCCGCTGcc                                                                                                                                                <  2:922830/150‑1 (MQ=255)        gACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACGTGGTGCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGcccc                                                                                                                                              <  1:74931/150‑1 (MQ=255)           cccAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCgtg                                                                                                                                           <  1:598156/150‑3 (MQ=255)             cAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGt                                                                                                                                         >  2:950444/1‑150 (MQ=255)               aCGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCa                                                                                                                                       <  2:287245/150‑1 (MQ=255)                cGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAg                                                                                                                                      <  2:318683/150‑1 (MQ=255)                 gACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGc                                                                                                                                     <  1:837230/150‑1 (MQ=255)                     ccGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGc                                                                                                                                 <  1:950444/150‑1 (MQ=255)                      cGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACACCGTGAGGGGCGGGACACACCAAAATGCTAAAAATCGACGCTCGCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGcc                                                                                                                                >  1:570055/1‑150 (MQ=255)                             aaaTTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGa                                                                                                                         <  1:1019399/150‑1 (MQ=255)                                ttGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCa                                                                                                                           >  2:722203/1‑145 (MQ=255)                                ttGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCa                                                                                                                           <  1:722203/145‑1 (MQ=255)                                     cccGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGGTCGCCTCACGCAGTGACGGGGGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATccc                                                                                                                 >  1:507340/1‑150 (MQ=255)                                                ggCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACAAACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGACGAt                                                                                                      >  2:848676/1‑150 (MQ=255)                                                   tGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGa                                                                                                   >  2:910440/1‑150 (MQ=255)                                                    taCCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGAc                                                                                                  >  1:1098395/2‑150 (MQ=255)                                                       cagcagCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAAt                                                                                               <  1:558484/150‑1 (MQ=255)                                                       cagcagCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAAt                                                                                               <  1:580244/150‑1 (MQ=255)                                                             ccccTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATgtcgtc                                                                                         >  1:548939/1‑150 (MQ=255)                                                                cTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGa                                                                                      >  2:554316/1‑150 (MQ=255)                                                                cTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGa                                                                                      <  1:554316/150‑1 (MQ=255)                                                                      caccaGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACa                                                                                    >  1:637813/1‑146 (MQ=255)                                                                      caccaGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACa                                                                                    <  2:637813/146‑1 (MQ=255)                                                                              tCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGc                                                                        <  1:407913/150‑1 (MQ=255)                                                                                    tCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCt                                                                  >  1:713803/1‑150 (MQ=255)                                                                                       ccTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGCGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGTACAGGCGCCGTTGGCGTACCTGAt                                                               >  2:665533/1‑150 (MQ=255)                                                                                         tCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGc                                                                        >  1:633001/1‑139 (MQ=255)                                                                                         tCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGc                                                                        <  2:633001/139‑1 (MQ=255)                                                                                                 tGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCAt                                                     <  1:406081/150‑1 (MQ=255)                                                                                                   aCGGGCGGGACAAACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGACGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATca                                                   <  1:848676/150‑1 (MQ=255)                                                                                                            acacacCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCtctc                                          <  1:910440/150‑1 (MQ=255)                                                                                                             cacacCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTcc                                         >  1:641589/1‑150 (MQ=255)                                                                                                              acacCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCca                                        <  2:1098395/150‑1 (MQ=255)                                                                                                              acacCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCca                                        <  2:548939/150‑1 (MQ=255)                                                                                                               gcagcggctgccggccgagcgcgtcctggccgagcagCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCcac                                       >  1:378597‑M2/38‑150 (MQ=255)                                                                                                               cacCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGACGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCcac                                       >  1:258965/1‑150 (MQ=255)                                                                                                                 ccAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAAc                                                        >  1:339458/1‑131 (MQ=255)                                                                                                                 ccAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCGTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAAc                                                        <  2:339458/131‑1 (MQ=255)                                                                                                                   aaaCTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAAc                                   <  2:570055/150‑1 (MQ=255)                                                                                                                      ctgccggccgagcgcgtcctggccgagcagCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGAt                                                                                                      >  1:348138‑M2/31‑80 (MQ=255)                                                                                                                      ctgccggccgagcgcgtcctggccgagcagCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGAt                                                                                                      <  2:348138‑M2/50‑1 (MQ=255)                                                                                                                            ggCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCATTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCaa                          >  1:633748/1‑150 (MQ=255)                                                                                                                                   aCGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAg                   <  1:1134299/150‑1 (MQ=255)                                                                                                                                          cggccggcAGCCGCTTCCCCGAGGTCAGCATGCCTGCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCTCATGCGCTCCACAAACCCCCGGCAAATTTCAGGGGGTGc            <  2:837958/150‑1 (MQ=255)                                                                                                                                               ggcAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCa                    >  2:515541/1‑137 (MQ=255)                                                                                                                                               ggcAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCa                    <  1:515541/137‑1 (MQ=255)                                                                                                                                                  agCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATtctc    <  2:378597‑M2/148‑1 (MQ=255)                                                                                                                                                   gCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCg   >  1:1042480‑M2/2‑150 (MQ=255)                                                                                                                                                    ccGCTGACCCGCCGGTAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGc  <  2:633748/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      GAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGC  >  NC_002947/5383083‑5383379

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.