New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5695456 =	53 (1.170)	4 (0.090)	4/242	NT	7.8%	coding (124/1272 nt)	pyrC'	dihydroorotase‑like protein
	?	NC_002947	5695501 =	43 (0.980)					coding (169/1272 nt)	pyrC'	dihydroorotase‑like protein

AATTGGACCAGGAGAATGCCCAGTGACCATCAGTATTCTTGGCGCCCGGGTGATCGACCCCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCGTGTCCCTGCGCGAGCCGGGTTACAGCCGCAAAGGCAACATCGCCAGTGAAACCCGCGCTGCCGTTGCCGGCGGTGTCACCAG  >  NC_002947/5695311‑5695598                                                                                                                                                  |                                                                                                                                                aaTTGGACCAGGAGAATGCCCAGTGACCATCAGTATTCTTGGCGCCCGGGTGATCGACCCCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAg                                                                                                                                             <  2:364574/150‑1 (MQ=255)  aTTGGACCAGGAGAATGCCCAGTGACCATCAGTATTCTTGGCGCCCGGGTGATCGACCCCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGc                                                                                                                                            >  2:787939/1‑150 (MQ=255)       aCCAGGAGAATGCCCAGTGACCATCAGTATTCTTGGCGCCCGGGTGATCGACCCCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCAc                                                                                                                                       >  1:88460/1‑150 (MQ=255)        ccAGGAGAATGCCCAGTGACCATCAGTATTCTTGGCGCCCGGGTGATTCCGCCCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGAACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACg                                                                                                                                      >  1:821940/1‑150 (MQ=255)        ccAGGAGAATGCCCAGTGACCATCAGTATTCTTGGCGCCCGGGTGATCGACCCCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACg                                                                                                                                      <  2:1052470/150‑1 (MQ=255)                aTGCCCAGTGACCATCAGTATTCTTGGCGCCCGGGTGATCGACCCCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGc                                                                                                                             <  1:1026594/150‑1 (MQ=255)                  gCCCAGTGACCATCAGTATTCTTGGCGCCCGGGTGATCGACCCCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTg                                                                                                                           >  1:95030/1‑150 (MQ=255)                    ccAGTGACCATCAGTATTCTTGGCGCCCGGGTGATCGACCCCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGAt                                                                                                                         <  2:88460/150‑1 (MQ=255)                    caaGTGACCATCAGTATTCTTGGCGCCCGGGTGATCGACCCCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGAt                                                                                                                         <  2:80592/148‑1 (MQ=255)                     cAGTGACCATCAGTATTCTTGGCGCCCGGGTGATCGACCGCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATg                                                                                                                        <  1:615627/150‑1 (MQ=255)                     cAGTGACCATCAGTATTCTTGGCGCCCGGGTGATCGACCCCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATg                                                                                                                        >  2:1017652/1‑150 (MQ=255)                     cAGTGACCATCAGTATTCTTGGCGCCCGGGTGATCGACCCCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATg                                                                                                                        <  1:528900/150‑1 (MQ=255)                             aTCAGTATTCTTGGCGCCCGGGTGATCGACCCCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTc                                                                                                                >  1:855651/1‑150 (MQ=255)                                aGTATTCTTGGCGCCCGGGTGATCGACCCCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCt                                                                                                             <  1:325688/150‑1 (MQ=255)                                aGTATTCTTGGCGCCCGGGTGATCGACCCCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCt                                                                                                             <  2:34538/150‑1 (MQ=255)                                 gTATTCTTGGCGCCCGGGTGATCGACCCCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTg                                                                                                            >  2:808744/1‑150 (MQ=255)                                    ttCTTGGCGCCCGGGTGATCGACCCCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTgcgc                                                                                                         >  1:607728/1‑150 (MQ=255)                                       ttGGCGCCCGGGTGATCGACCCCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCCGCC‑CACCACCCCAAGCTTAGGGCCTGGTCGCTGCGCCCg                                                                                                      <  1:630636/150‑1 (MQ=255)                                         ggCGCCCGGGTGATCGACCCCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGc                                                                                                    <  1:106071/150‑1 (MQ=255)                                              ccGGGTGATCGTCCCCAACAGCGCGCTGGACCAGGTCGCCGATCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGt                                                                                               <  2:436039/150‑1 (MQ=255)                                                gggTGATCGACCCCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCg                                                                                             <  1:153738/150‑1 (MQ=255)                                                     aTCGACCCCAACAGTGGCCTGGACCAGGCCGCCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTg                                                                                        <  1:1035725/150‑1 (MQ=255)                                                      acaccgccggcaacggcagcgcgggtttcactggcgatgttgcctttgcggctgtaacccggctcgcgcagggacacgcccaggtcgaccagGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTgg                                                                                       >  1:264172‑M1/93‑150 (MQ=255)                                                       cGACCCCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTggg                                                                                      <  1:1017652/150‑1 (MQ=255)                                                        gACCCCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGc                                                                                     <  1:725389/150‑1 (MQ=255)                                                         aCCCCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCg                                                                                    >  1:1028069/1‑150 (MQ=255)                                                           ggcaacggcagctcgggtttcactggcgatgttgccttttcggctgtaacccggctcgcgcagggacacgcaccggccggtttcagcGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCgtg                                                                                  >  2:250613‑M1/88‑150 (MQ=255)                                                           cccAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCgtg                                                                                  >  1:564265/1‑150 (MQ=255)                                                            ccAACAGTGGCGCGGCCCTGCTCTCCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCgtgt                                                                                 <  2:821940/150‑1 (MQ=255)                                                            ccAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCgtgt                                                                                 >  1:1202118/1‑150 (MQ=255)                                                            ccAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCgcag                                                                                 <  1:256601/150‑4 (MQ=255)                                                                  gTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCGTGTCCCTgc                                                                           <  2:1202118/150‑1 (MQ=255)                                                                      ccTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTg                                                                                                 >  2:569159/1‑124 (MQ=255)                                                                      ccTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTg                                                                                                 <  1:569159/124‑1 (MQ=255)                                                                           aCCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCGTGTCCCTGCGCGAGCCgg                                                                  <  1:808744/150‑1 (MQ=255)                                                                                 tCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCGTGTCCCTGCGCGAGCCGGGTTACa                                                            <  2:1068019/150‑1 (MQ=255)                                                                                 tCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCGTGTCCCTGCGCGAGCCGGGTTACa                                                            >  2:443080/1‑150 (MQ=255)                                                                                  cactggcgatgttgcctttgcggctgtaacccggctcgcgcagggacacgcccaggtcgaccagGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTc                                                                                              >  2:1096372‑M1/65‑115 (MQ=255)                                                                                  cactggcgatgttgcctttgcggctgtaacccggctcgcgcagggacacgcccaggtcgaccagGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTc                                                                                              <  1:1096372‑M1/51‑1 (MQ=255)                                                                                   aCCGACCTGCACCTGGACGGCGGCCGCATTGTCGGCATCGGTGCAGCACCCGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCGTGTCCCTGCGCGAGCCGGGTTACAGc                                                          <  2:564265/150‑1 (MQ=255)                                                                                     cGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCGTGTCCCTGCGCGAGCCGGGTTACAGCCg                                                        >  2:702352/1‑150 (MQ=255)                                                                                         cTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCGTGTCCCTGCGCGAGCCGGGTTACAGCCGCaaa                                                    <  2:607728/150‑1 (MQ=255)                                                                                          tGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCGTGTCCCTGCGCGAGCCGGGTTACAGCCGCAAAg                                                   >  1:415219/1‑150 (MQ=255)                                                                                              ccTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCGTGTCCCTGCGCGAGCCGGGTTACAGCCGCAAAGGCaa                                               <  2:275527/150‑1 (MQ=255)                                                                                               cTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCGTGTCCCTGCGCGAGCCGGGTTACAGCCGCAAAGGCAAc                                              >  2:715663/1‑150 (MQ=255)                                                                                                 ggACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCGTGTCCCTGCGCGAGCCGGGTTACAGCCGCAAAGGCAACAt                                            >  1:862064/1‑150 (MQ=255)                                                                                                         gcCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCGTGTCCCTGCGCGAGCCGGGTTACAGCCGCAAAGGCAACATCGCCAGTg                                    >  1:162348/1‑150 (MQ=255)                                                                                                          ccGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCGTGTCCCTGCGCGAGCCGGGTTACAGCCGCAAAGGCAACATCGCCAGTGa                                   >  2:976833/1‑150 (MQ=255)                                                                                                                  tCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCGTGTCCCt                                                                             >  2:1065285/1‑100 (MQ=255)                                                                                                                  tCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCGTGTCCCt                                                                             <  1:1065285/100‑1 (MQ=255)                                                                                                                    gCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCGTGTCCCTGCGCGAGCCgg                                                                  >  2:104941/1‑109 (MQ=255)                                                                                                                    gCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCGTGTCCCTGCGCGAGCCgg                                                                  <  1:104941/109‑1 (MQ=255)                                                                                                                     ccATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCGTGTCCCTGCGCGAGCCTGGTTACAAACACAAAGGCAACATCGCCAGTGAAACCCGCGCTg                        >  2:316089/1‑150 (MQ=255)                                                                                                                              ccgcACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCGTGTCCCTGCGCGAGCCGGGTTACAGCCGCAAAGGCAACATCGCCAGTGAAACCCGCGCTGCCGTTGCcg               >  1:318427/1‑150 (MQ=255)                                                                                                                                    cggccggTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCGTGTCCCTGCGCGAGCCGGGTTACAGCCGCAAAGGCAACATCGCCAGTGAAACCCGCGCTGCCATTGccattctcc         <  2:162348/150‑8 (MQ=255)                                                                                                                                      gccggTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCt                                                                                                                    >  1:826238/1‑41 (MQ=255)                                                                                                                                      gccggTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCt                                                                                                                    <  2:826238/41‑1 (MQ=255)                                                                                                                                           gttCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGAGCCCTCCCTGGTCGACCTGGGCGTGTCCCTGCGCGAGCCGGGTTACAGCCGCAAAGGCGACATCGCCAGTGAAACCCGCGCTGCCGTTGCCGGCGGTGTCACCAg  >  1:634262/2‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                                AATTGGACCAGGAGAATGCCCAGTGACCATCAGTATTCTTGGCGCCCGGGTGATCGACCCCAACAGTGGCCTGGACCAGGTCACCGACCTGCACCTGGACGGCGGCCGCATTGTCGCCATCGGCGCCGCACCGGCCGGTTTCAGCGCCAGCCGCACGA‑TCCAGGCTGATGGCCTGGTCGCTGCGCCCGGCCTGGTCGACCTGGGCGTGTCCCTGCGCGAGCCGGGTTACAGCCGCAAAGGCAACATCGCCAGTGAAACCCGCGCTGCCGTTGCCGGCGGTGTCACCAG  >  NC_002947/5695311‑5695598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.