New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5726880 =	46 (1.020)	4 (0.090)	4/232	NT	9.3%	coding (142/2574 nt)	opgH	glucans biosynthesis glucosyltransferase H
	?	NC_002947	5726901 =	35 (0.830)					coding (121/2574 nt)	opgH	glucans biosynthesis glucosyltransferase H

CACGACCTTGGTGCGTTTGATCGGCGGGGCGATCTTCAGGCACAGGCGGCCGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAGGTACTCGCCAAGCGATTCCGGCCTTGCGCTTGAGTTACTCA  >  NC_002947/5726731‑5727020                                                                                                                                                      |                                                                                                                                             cACGACCTTGGTGCGTTTGATCGGCGGGGCGATCTTCAGGCACAGGCGGCCGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCt                                                                                                                                              >  2:139082/1‑150 (MQ=255) cACGACCTTGGTGCGTTTGATCGGCGGGGCGATCTTCAGGCACAGGCGGCCGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCt                                                                                                                                              >  1:523131/1‑150 (MQ=255)  aCGACCTTGGTGCGTTTGATCGGCGGGGCGATCTTCAGGCACAGGCGGCCGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTg                                                                                                                                             >  1:715589/1‑150 (MQ=255)     cctggagctatcagttgcctgccgatgagtaactcaagcgcaaggccggaatcgcttggcgagtacctggcccacccaccactgagcgacgagcagcgggctgagcttgccagctgcacctcgttcagtgagctacaccaacgctTggcg                                                                                                                                          >  1:228116‑M1/146‑150 (MQ=255)      ccTTGGTGCGTTTGATCGGCGGGGCGATCTTCAGGCACAGGCGGCCGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTggcgg                                                                                                                                         <  2:1022650/150‑1 (MQ=255)                   gATCGGCGGGGCGATCTTCAGGCACAGGCGGCCGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGTCAGAGCTGGCGGCCGGGTTGgccgc                                                                                                                            <  2:882934/150‑1 (MQ=255)                     gcctgccgctgagtaactcaagcgcaaggccggaatcgcttggcgagtacctggcccacctaccactgagcgacgagcagcgggctgagcttgccagctgcacctctttcagtgagctacaccaacgctTGGCGGCCGGGTTGGCCGCCa                                                                                                                          >  1:161314‑M1/130‑150 (MQ=255)                             gCGATCTTCAGGCACAGGCGGCCGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTgg                                                                                                                  >  1:594645/1‑150 (MQ=255)                             gCGAGCTTCAGGCACAGGCGGCCGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTgg                                                                                                                  <  2:246649/150‑1 (MQ=255)                                aTCTTCAGGCACAGGCGGCCGCTGCCGTCGCCGTCGCTCCTCTCGGCTTTTTCCAGCTCGGCGGCGCTGCCCATGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGgtgt                                                                                                               <  1:569718/150‑1 (MQ=255)                                   ttCAGGCACAGGCGGCCGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGc                                                                                                            >  2:491772/1‑150 (MQ=255)                                        gCACAGGCGGCCGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGc                                                                                                                       >  2:558310/1‑134 (MQ=255)                                        gCACAGGCGGCCGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGc                                                                                                                       <  1:558310/134‑1 (MQ=255)                                        gCACAGGCGGCCGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACt                                                                                                       <  1:491772/150‑1 (MQ=255)                                                  ccGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTg                                                                                                                                 <  1:1096338/114‑1 (MQ=255)                                                  ccGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTg                                                                                                                                 >  2:1096338/1‑114 (MQ=255)                                                   cGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTCCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCTTCGGGAGAGCTGGCGGCCGGGCTTGCCGCCAATCGTTGGGGACGCCCCCTGACCGAGGTGc                                                                                            >  2:211288/1‑150 (MQ=255)                                                                gCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCAGGTTGGCCCACAAGCGCTGATGGAGCATGCGGAATGAGTTTCTGCTGGCAAGCTc                                                                               >  2:918291/1‑150 (MQ=255)                                                                  cGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGaa                                                                                                    >  2:649600/1‑127 (MQ=255)                                                                  cGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGaa                                                                                                    <  1:649600/127‑1 (MQ=255)                                                                  cGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAg                                                                             <  2:925860/150‑1 (MQ=255)                                                                   gAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTg                                                                                                                                 <  1:1136679/97‑1 (MQ=255)                                                                   gAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTg                                                                                                                                 >  2:1136679/1‑97 (MQ=255)                                                                       ctggcccacctaccactgagcgacgagcagcgggctgagcttgccagctgcacctcgttcagtgagctacaccaacgctTggc                                                                                                                                           <  1:290530‑M1/4‑1 (MQ=255)                                                                       ctggcccacctaccactgagcgacgagcagcgggctgagcttgccagctgcacctcgttcagtgagctacaccaacgctTggc                                                                                                                                           >  2:290530‑M1/80‑83 (MQ=255)                                                                       aTTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCgc                                                                        <  1:401848/150‑1 (MQ=255)                                                                       aTTTCGGCTTCTTCCAGATCGGAGGCGTGTGCCATTCTGATGCGCGGGCCCACCGAGGCCTGCACGGATGTTCCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCgc                                                                        <  1:209422/150‑1 (MQ=255)                                                                        tttCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCgctg                                                                                                                   >  2:63404/1‑103 (MQ=255)                                                                        tttCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGCTg                                                                                                                   <  1:63404/106‑1 (MQ=255)                                                                            ggCTTCTTCCAGCTCGGCGGCGTTGCCTACGCCCATTCGCCCGCCCTCCGAGGCGTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCtc                                                                   <  2:615389/150‑1 (MQ=255)                                                                            ggCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCtc                                                                   >  2:574169/1‑150 (MQ=255)                                                                             gCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCtcg                                                                  >  2:364674/1‑150 (MQ=255)                                                                              cttcttCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGc                                                                                         <  1:1127193/126‑1 (MQ=255)                                                                              cttcttCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGc                                                                                         >  2:1127193/1‑126 (MQ=255)                                                                                tcttcCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCtcgtcg                                                               <  1:364674/150‑1 (MQ=255)                                                                                  ttcCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGtt                                                                                                                                  <  2:1075991/81‑1 (MQ=255)                                                                                  ttcCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGtt                                                                                                                                  >  1:1075991/1‑81 (MQ=255)                                                                                     cAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAg                                                          <  2:523131/150‑1 (MQ=255)                                                                                              ggcgCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTg                                                 <  1:139082/150‑1 (MQ=255)                                                                                               gcgcTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTTAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTgg                                                <  2:594645/150‑1 (MQ=255)                                                                                                  cTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGcc                                             >  2:1097801/1‑150 (MQ=255)                                                                                                   tGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCa                                            >  2:1207674/1‑150 (MQ=255)                                                                                                      ccgcGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAGGt                                         >  1:1205379/4‑150 (MQ=255)                                                                                                       cACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAGGTa                                        >  2:636551/1‑150 (MQ=255)                                                                                                               ggCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCTCTGCTCGGCGCTCAGTGGTAGGTGGGCCAGGTACTCGCCaa                                <  1:211288/150‑1 (MQ=255)                                                                                                                  ccagctgcacctcgttcagtgagctacaccaacgctTGGCGGCCGGGTTGGCCGCCAAGCGTTg                                                                                                                   <  2:1142034‑M1/28‑1 (MQ=255)                                                                                                                      gCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAGGTACTCGCCAAGCGATTc                         >  1:204877/1‑150 (MQ=255)                                                                                                                        ccACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAGGTACTCGCCAAGCGATTCCg                       >  2:842410/1‑150 (MQ=255)                                                                                                                         cACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGCTCGGCTGGGTACTCGCCAAGCGATTCCgg                      >  1:305470/1‑150 (MQ=255)                                                                                                                                  cTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGt                                                         <  2:798989/106‑1 (MQ=255)                                                                                                                                  cTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGt                                                         >  1:798989/1‑106 (MQ=255)                                                                                                                                    gCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAGGTACTCGCCAAGCGATTCCGGCCTTGTGCTTg           >  1:402358/1‑150 (MQ=255)                                                                                                                                     tgagctacaccaacgctTGGCGGCCAACCCGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCCATGCTCGTCATTCATGGGGAGGTGGGCCAGGTACTCGCCAAGCGATTCCGGCCTTGCGCTTGa          <  1:1174441‑M1/133‑1 (MQ=255)                                                                                                                                        ggCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAGGTACTCGCCAAGCGATTCCGGCCTTGCGCTTGAGtt       <  2:715589/150‑1 (MQ=255)                                                                                                                                             cGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAGGTACTCGCCAAGCGATTCCGGCCTTGCGCTTGAGTTACCCa  <  1:1207674/150‑1 (MQ=255)                                                                                                                                               caacgctTGGCGGCCAACCCGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTgg                                                                                      <  1:1142034‑M1/57‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                             CACGACCTTGGTGCGTTTGATCGGCGGGGCGATCTTCAGGCACAGGCGGCCGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAGGTACTCGCCAAGCGATTCCGGCCTTGCGCTTGAGTTACTCA  >  NC_002947/5726731‑5727020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.