New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5726880 =	46 (1.020)	4 (0.090)	4/232	NT	9.3%	coding (142/2574 nt)	opgH	glucans biosynthesis glucosyltransferase H
	?	NC_002947	5726901 =	35 (0.830)					coding (121/2574 nt)	opgH	glucans biosynthesis glucosyltransferase H

GCGATCTTCAGGCACAGGCGGCCGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAGGTACTCGCCAAGCGATTCCGGCCTTGCGCTTGAGTTACTCATCGGCAGGCAACTGATAGCTCCAGG  >  NC_002947/5726759‑5727045                                                                                                                                               |                                                                                                                                                 gCGATCTTCAGGCACAGGCGGCCGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTgg                                                                                                                                           >  1:594645/1‑150 (MQ=255) gCGAGCTTCAGGCACAGGCGGCCGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTgg                                                                                                                                           <  2:246649/150‑1 (MQ=255)    aTCTTCAGGCACAGGCGGCCGCTGCCGTCGCCGTCGCTCCTCTCGGCTTTTTCCAGCTCGGCGGCGCTGCCCATGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGgtgt                                                                                                                                        <  1:569718/150‑1 (MQ=255)       ttCAGGCACAGGCGGCCGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGc                                                                                                                                     >  2:491772/1‑150 (MQ=255)          tcaagcgcaaggccggaatcgcttggcgagtacctggcccacctccccatgaatgacgagcatggggctgagcttgccagctgcacctcgttcagtgagctacaccaacgcttggcggccgggttggccgccaAGCGTTGGTGTAGCTCa                                                                                                                                  <  1:1174441‑M2/17‑1 (MQ=255)            gCACAGGCGGCCGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGc                                                                                                                                                <  1:558310/134‑1 (MQ=255)            gCACAGGCGGCCGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGc                                                                                                                                                >  2:558310/1‑134 (MQ=255)            gCACAGGCGGCCGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACt                                                                                                                                <  1:491772/150‑1 (MQ=255)                       cGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTCCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCTTCGGGAGAGCTGGCGGCCGGGCTTGCCGCCAATCGTTGGGGACGCCCCCTGACCGAGGTGc                                                                                                                     >  2:211288/1‑150 (MQ=255)                                    gCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCAGGTTGGCCCACAAGCGCTGATGGAGCATGCGGAATGAGTTTCTGCTGGCAAGCTc                                                                                                        >  2:918291/1‑150 (MQ=255)                                      cGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGaa                                                                                                                             <  1:649600/127‑1 (MQ=255)                                      cGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGaa                                                                                                                             >  2:649600/1‑127 (MQ=255)                                      cGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAg                                                                                                      <  2:925860/150‑1 (MQ=255)                                           aTTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCgc                                                                                                 <  1:401848/150‑1 (MQ=255)                                           aTTTCGGCTTCTTCCAGATCGGAGGCGTGTGCCATTCTGATGCGCGGGCCCACCGAGGCCTGCACGGATGTTCCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCgc                                                                                                 <  1:209422/150‑1 (MQ=255)                                            tttCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCgctg                                                                                                                                            >  2:63404/1‑103 (MQ=255)                                            tttCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGCTg                                                                                                                                            <  1:63404/106‑1 (MQ=255)                                                ggCTTCTTCCAGCTCGGCGGCGTTGCCTACGCCCATTCGCCCGCCCTCCGAGGCGTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCtc                                                                                            <  2:615389/150‑1 (MQ=255)                                                ggCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCtc                                                                                            >  2:574169/1‑150 (MQ=255)                                                 gCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCtcg                                                                                           >  2:364674/1‑150 (MQ=255)                                                  cttcttCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGc                                                                                                                  >  2:1127193/1‑126 (MQ=255)                                                  cttcttCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGc                                                                                                                  <  1:1127193/126‑1 (MQ=255)                                                    tcttcCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCtcgtcg                                                                                        <  1:364674/150‑1 (MQ=255)                                                         cAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAg                                                                                   <  2:523131/150‑1 (MQ=255)                                                                  ggcgCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTg                                                                          <  1:139082/150‑1 (MQ=255)                                                                   gcgcTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTTAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTgg                                                                         <  2:594645/150‑1 (MQ=255)                                                                      cTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGcc                                                                      >  2:1097801/1‑150 (MQ=255)                                                                       tGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCa                                                                     >  2:1207674/1‑150 (MQ=255)                                                                          ccgcGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAGGt                                                                  >  1:1205379/4‑150 (MQ=255)                                                                           cACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAGGTa                                                                 >  2:636551/1‑150 (MQ=255)                                                                                   ggCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCTCTGCTCGGCGCTCAGTGGTAGGTGGGCCAGGTACTCGCCaa                                                         <  1:211288/150‑1 (MQ=255)                                                                                      ccagctgcacctcgttcagtgagctacaccaacgcttggcggccgggttggccgccaAGCGTTg                                                                                                                                            <  1:1142034‑M2/7‑1 (MQ=255)                                                                                      ccagctgcacctcgttcagtgagctacaccaacgctTGGCGGCCGGGTTGGCCGCCAAGCGTTg                                                                                                                                            <  2:1142034‑M1/28‑1 (MQ=255)                                                                                          gCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAGGTACTCGCCAAGCGATTc                                                  >  1:204877/1‑150 (MQ=255)                                                                                            ccACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAGGTACTCGCCAAGCGATTCCg                                                >  2:842410/1‑150 (MQ=255)                                                                                             cACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGCTCGGCTGGGTACTCGCCAAGCGATTCCgg                                               >  1:305470/1‑150 (MQ=255)                                                                                                      cTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGt                                                                                  >  1:798989/1‑106 (MQ=255)                                                                                                      cTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGt                                                                                  <  2:798989/106‑1 (MQ=255)                                                                                                        gCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAGGTACTCGCCAAGCGATTCCGGCCTTGTGCTTg                                    >  1:402358/1‑150 (MQ=255)                                                                                                         tgagctacaccaacgctTGGCGGCCAACCCGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCCATGCTCGTCATTCATGGGGAGGTGGGCCAGGTACTCGCCAAGCGATTCCGGCCTTGCGCTTGa                                   <  1:1174441‑M1/133‑1 (MQ=255)                                                                                                            ggCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAGGTACTCGCCAAGCGATTCCGGCCTTGCGCTTGAGtt                                <  2:715589/150‑1 (MQ=255)                                                                                                                 cGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAGGTACTCGCCAAGCGATTCCGGCCTTGCGCTTGAGTTACCCa                           <  1:1207674/150‑1 (MQ=255)                                                                                                                   caacgcttggcggccaacccggccgccaAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTgg                                                                                                               <  2:1142034‑M2/36‑1 (MQ=255)                                                                                                                   caacgctTGGCGGCCAACCCGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTgg                                                                                                               <  1:1142034‑M1/57‑1 (MQ=255)                                                                                                                          tggcggccaacccggccgccaAGCGTTGGTGTAGCTCACTGAAAGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAGGTACTCGCCAAGCGATTCCGGCCTTGCGCTTGAGTTACTCAGCggcaggc                  >  1:161314‑M2/22‑150 (MQ=255)                                                                                                                              GGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAGGTACTCGCCAAGCGATTCCGGCCTTGCGCTTGAGTCACTCATCGGCAGGCAACt              <  2:672334‑M1/150‑1 (MQ=255)                                                                                                                                   ggTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAGGTACTCGCCAAGCGATTCCGGCCTTGCGCtt                                     <  1:460000/122‑1 (MQ=255)                                                                                                                                   ggTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAGGTACTCGCCAAGCGATTCCGGCCTTGCGCtt                                     >  2:460000/1‑122 (MQ=255)                                                                                                                                   ggTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAGGTACTCGCCAAGCGATTCCGGCCTTGCGCTTGAGTTACTCATCGGCAGGCAACTGATAg         <  2:1205379/150‑1 (MQ=255)                                                                                                                                          cgccaAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTGGGTGGGCCAGGTACTCGCCAAGCGATTCCGGCCTTGCGCTTGAGTTACTCATCGGCAGGCAACTGATAGCTCCAgg  >  1:228116‑M2/6‑150 (MQ=255)                                                                                                                                           gccaAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAg                                                                    <  1:290530‑M2/79‑1 (MQ=255)                                                                                                                                           gccaAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAg                                                                    >  2:290530‑M2/5‑83 (MQ=255)                                                                                                                                               |                                                                                                                                                 GCGATCTTCAGGCACAGGCGGCCGCTGCCGTCGACGCCGAGCATTTCGGCTTCTTCCAGCTCGGCGGCGCTGCCCACGGTCAGGCGCGGGCCCACCGAGGCCTGCACGGCCTCGGCAGAGCTGGCGGCCGGGTTGGCCGCCAAGCGTTGGTGTAGCTCACTGAACGAGGTGCAGCTGGCAAGCTCAGCCCGCTGCTCGTCGCTCAGTGGTAGGTGGGCCAGGTACTCGCCAAGCGATTCCGGCCTTGCGCTTGAGTTACTCATCGGCAGGCAACTGATAGCTCCAGG  >  NC_002947/5726759‑5727045

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.