New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5758217 =	45 (1.000)	8 (0.190)	7/236	NT	16.5%	intergenic (+185/+333)	PP_5050/PP_5051	transposase/hypothetical protein
	?	NC_002947	5758237 =	38 (0.880)					intergenic (+205/+313)	PP_5050/PP_5051	transposase/hypothetical protein

GCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCAAAACTGGCA  >  NC_002947/5758069‑5758360                                                                                                                                                     |                                                                                                                                                 atgtattgcttattgcagggggcgtgccagttttgcaaaagacgtgaatactgggctttgcgggtgatttggccggattttgaggggatttgtgccttccagaggtgcagcgggcacaggaacggtgcattcagacgactgaaatggcTg                                                                                                                                                 >  1:68862‑M1/149‑150 (MQ=255)   aGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATggg                                                                                                                                               <  1:646987/150‑1 (MQ=255)   aGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATggg                                                                                                                                               <  1:461268/150‑1 (MQ=255)     tATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGgc                                                                                                                                             >  2:866742/1‑150 (MQ=255)       tCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGgc‑gc                                                                                                                                          >  2:769805/1‑150 (MQ=255)               tGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGc                                                                                                                                  <  1:1122563/150‑1 (MQ=255)               tGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGc                                                                                                                                  <  1:13167/150‑1 (MQ=255)                    agaAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAg                                                                                                                             >  2:222651/1‑150 (MQ=255)                     ggcgtgccagttttgcaaaagccgtgaatactgggctttgcgggtgatttggccggattttgaggggatttgtgccttccagaggtgcagcgggcacaggaacggtgcattcagacgactgaaatggcTGGGGC‑GCAAAGCGGCCCCAGc                                                                                                                            >  2:61733‑M1/129‑150 (MQ=255)                            tctGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGAGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCa                                                                                                                     <  2:742052/150‑1 (MQ=255)                              gttttgcaaaagccgtgaatactgggctttgcgggtgatttggccggattttgaggggatttgtgccttccagaggtgcagcgggcacaggaacggtgcattcagacgactgaaatggcTGGGGC‑GCAAAGCGGCCCCa                                                                                                                              <  2:607943‑M1/20‑1 (MQ=255)                              gttttgcaaaagccgtgaatactgggctttgcgggtgatttggccggattttgaggggatttgtgccttccagaggtgcagcgggcacaggaacggtgcattcagacgactgaaatggcTGGGGC‑GCAAAGCGGCCCCa                                                                                                                              >  1:607943‑M1/120‑139 (MQ=255)                                 cACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAgtcgt                                                                                                                <  2:1052585/150‑1 (MQ=255)                                  aCGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAgtcgtc                                                                                                               <  1:222651/150‑1 (MQ=255)                                  aCGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAgtcgtc                                                                                                               <  2:1081934/150‑1 (MQ=255)                                   cGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCt                                                                                                              >  2:308056/1‑150 (MQ=255)                                       gACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAAt                                                                                                          <  1:769805/150‑1 (MQ=255)                                          tCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCgg                                                                                                                                   <  2:71674/122‑1 (MQ=255)                                          tCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCgg                                                                                                                                   >  1:71674/1‑122 (MQ=255)                                          tCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCt                                                                                                              >  2:236024/1‑143 (MQ=255)                                          tCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCt                                                                                                              <  1:236024/143‑1 (MQ=255)                                                cTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTc                                                                                                 >  2:688218/1‑150 (MQ=255)                                                cTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTc                                                                                                 >  1:553245/1‑150 (MQ=255)                                                cTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTc                                                                                                 >  2:878593/1‑150 (MQ=255)                                                 tCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAgtcgtc                                                                                                               <  2:361175/135‑1 (MQ=255)                                                 tCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAgtcgtc                                                                                                               >  1:361175/1‑135 (MQ=255)                                                  cGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGACAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCt                                                                                               <  1:1157118/150‑1 (MQ=255)                                                           tGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAgtcgt                                                                                                                <  1:1078826/124‑1 (MQ=255)                                                           tGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAgtcgt                                                                                                                >  2:1078826/1‑124 (MQ=255)                                                                 agGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACct                                                                                >  1:846348/1‑150 (MQ=255)                                                                     cGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTgg                                                                            >  1:668302/1‑150 (MQ=255)                                                                       aTGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGaa                                                                          <  2:553245/150‑1 (MQ=255)                                                                                      aaaaTTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTc                                                           >  1:656490/1‑150 (MQ=255)                                                                                               cTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAAt                                                                                                          >  1:590912/1‑94 (MQ=255)                                                                                               cTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAAt                                                                                                          <  2:590912/94‑1 (MQ=255)                                                                                                tCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGc                                                 >  2:369679/1‑150 (MQ=255)                                                                                                tCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGc                                                 <  2:268662/150‑1 (MQ=255)                                                                                                     ccATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAAt                                            <  2:656490/150‑1 (MQ=255)                                                                                                        tAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCAc                                         >  1:234951/1‑150 (MQ=255)                                                                                                                   ccccgAATCCTGTGGGAGCGGCCTTCTGTCGCGATGGGGC‑GCAAATCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGGAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGccc                              <  2:574824/149‑1 (MQ=255)                                                                                                                     cccAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCGCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCg                                                   >  1:1124302/1‑127 (MQ=255)                                                                                                                     cccAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACctct                                                                              >  1:716782/1‑100 (MQ=255)                                                                                                                     cccAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACctct                                                                              <  2:716782/100‑1 (MQ=255)                                                                                                                     cccAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCg                                                   <  2:1124302/127‑1 (MQ=255)                                                                                                                      ccAATCCTGGGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGGGGGCGCACATACTTTAGACGACTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCTCTCAACATCCGGCCAAATCACCCGCAAAGCCCAGt                           >  2:644764/1‑150 (MQ=255)                                                                                                                       cAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTa                          >  1:927334/1‑150 (MQ=255)                                                                                                                           ccTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCa                      <  1:878593/150‑1 (MQ=255)                                                                                                                                 attcagacgactgaaatggcTGGGGCCGCTTTGCG‑CCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCa                             <  1:1085226‑M1/117‑1 (MQ=255)                                                                                                                                 attcagacgactgaaatggcTGGGGCCGCTTTGCG‑CCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCa                             >  2:1085226‑M1/21‑137 (MQ=255)                                                                                                                                   aGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCtttt              <  2:927334/150‑1 (MQ=255)                                                                                                                                    gCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTg             <  2:668302/150‑1 (MQ=255)                                                                                                                                        ccTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCaaa         >  2:1050075/1‑150 (MQ=255)                                                                                                                                         gactgaaatggcTGGGGCCGCTTTGCG‑CCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCa                             >  1:307823‑M1/13‑129 (MQ=255)                                                                                                                                         gactgaaatggcTGGGGCCGCTTTGCG‑CCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCa                             <  2:307823‑M1/117‑1 (MQ=255)                                                                                                                                            tgaaatggcTGGGGCCGCTTTGCG‑CCCCATCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCAAAACTg     <  2:1183810‑M1/141‑1 (MQ=255)                                                                                                                                               tCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCAAAACTGGCa  >  1:1023855/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                 GCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCAAAACTGGCA  >  NC_002947/5758069‑5758360

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.