New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5758217 =	45 (1.000)	8 (0.190)	7/236	NT	16.5%	intergenic (+185/+333)	PP_5050/PP_5051	transposase/hypothetical protein
	?	NC_002947	5758237 =	38 (0.880)					intergenic (+205/+313)	PP_5050/PP_5051	transposase/hypothetical protein

AGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCAAAACTGGCACGCCCCCTGCAATAAGCAATACAT  >  NC_002947/5758088‑5758384                                                                                                                                                       |                                                                                                                                                    agaAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAg                                                                                                                                                     >  2:222651/1‑150 (MQ=255)  ggcgtgccagttttgcaaaagccgtgaatactgggctttgcgggtgatttggccggattttgaggggatttgtgccttccagaggtgcagcgggcacaggaacggtgcattcagacgactgaaatggcTGGGGC‑GCAAAGCGGCCCCAGc                                                                                                                                                    >  2:61733‑M1/129‑150 (MQ=255)         tctGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGAGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCa                                                                                                                                             <  2:742052/150‑1 (MQ=255)          cagttttgcaaaagccgtgaatactgggctttgcgggtgatttggccggattttgaggggatttgtgccttccagaggtgcagcgggcacaggaacggtgcattcagacgactgaaatggatggggcgcaaagcggccccaGCCATTTCa                                                                                                                                             <  2:1183810‑M2/9‑1 (MQ=255)              cACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAgtcgt                                                                                                                                        <  2:1052585/150‑1 (MQ=255)               aCGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAgtcgtc                                                                                                                                       <  2:1081934/150‑1 (MQ=255)               aCGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAgtcgtc                                                                                                                                       <  1:222651/150‑1 (MQ=255)                cGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCt                                                                                                                                      >  2:308056/1‑150 (MQ=255)                    gACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAAt                                                                                                                                  <  1:769805/150‑1 (MQ=255)                       tCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCt                                                                                                                                      <  1:236024/143‑1 (MQ=255)                       tCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCt                                                                                                                                      >  2:236024/1‑143 (MQ=255)                             cTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTc                                                                                                                         >  2:878593/1‑150 (MQ=255)                             cTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTc                                                                                                                         >  1:553245/1‑150 (MQ=255)                             cTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTc                                                                                                                         >  2:688218/1‑150 (MQ=255)                              tCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAgtcgtc                                                                                                                                       >  1:361175/1‑135 (MQ=255)                              tCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAgtcgtc                                                                                                                                       <  2:361175/135‑1 (MQ=255)                               cGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGACAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCt                                                                                                                       <  1:1157118/150‑1 (MQ=255)                                  tgggctttgcgggtgatttggccggattttgaggggatttgtgccttccagaggtgcagcgggcacaggaacggtgcattcagacgactgaaatggctggggcgcaaagcggccccaGCCATTTCAgtc                                                                                                                                          <  2:307823‑M2/12‑1 (MQ=255)                                  tgggctttgcgggtgatttggccggattttgaggggatttgtgccttccagaggtgcagcgggcacaggaacggtgcattcagacgactgaaatggctggggcgcaaagcggccccaGCCATTTCAgtc                                                                                                                                          >  1:307823‑M2/118‑129 (MQ=255)                                  tgggctttgcgggtgatttggccggattttgaggggatttgtgccttccagaggtgcagcgggcacaggaacggtgcattcagacgactgaaatggctggggcgcaaagcggccccaGCCATTTCAGTCGTCTGAAt                                                                                                                                  >  2:1085226‑M2/118‑137 (MQ=255)                                  tgggctttgcgggtgatttggccggattttgaggggatttgtgccttccagaggtgcagcgggcacaggaacggtgcattcagacgactgaaatggctggggcgcaaagcggccccaGCCATTTCAGTCGTCTGAAt                                                                                                                                  <  1:1085226‑M2/20‑1 (MQ=255)                                        tGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAgtcgt                                                                                                                                        >  2:1078826/1‑124 (MQ=255)                                        tGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAgtcgt                                                                                                                                        <  1:1078826/124‑1 (MQ=255)                                              agGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACct                                                                                                        >  1:846348/1‑150 (MQ=255)                                                  cGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTgg                                                                                                    >  1:668302/1‑150 (MQ=255)                                                    aTGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGaa                                                                                                  <  2:553245/150‑1 (MQ=255)                                                                   aaaaTTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTc                                                                                   >  1:656490/1‑150 (MQ=255)                                                                            cTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAAt                                                                                                                                  <  2:590912/94‑1 (MQ=255)                                                                            cTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAAt                                                                                                                                  >  1:590912/1‑94 (MQ=255)                                                                             tCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGc                                                                         >  2:369679/1‑150 (MQ=255)                                                                             tCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGc                                                                         <  2:268662/150‑1 (MQ=255)                                                                                  ccATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAAt                                                                    <  2:656490/150‑1 (MQ=255)                                                                                     tAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCAc                                                                 >  1:234951/1‑150 (MQ=255)                                                                                                ccccgAATCCTGTGGGAGCGGCCTTCTGTCGCGATGGGGC‑GCAAATCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGGAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGccc                                                      <  2:574824/149‑1 (MQ=255)                                                                                                  cccAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCGCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCg                                                                           >  1:1124302/1‑127 (MQ=255)                                                                                                  cccAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACctct                                                                                                      <  2:716782/100‑1 (MQ=255)                                                                                                  cccAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACctct                                                                                                      >  1:716782/1‑100 (MQ=255)                                                                                                  cccAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCg                                                                           <  2:1124302/127‑1 (MQ=255)                                                                                                   ccAATCCTGGGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGGGGGCGCACATACTTTAGACGACTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCTCTCAACATCCGGCCAAATCACCCGCAAAGCCCAGt                                                   >  2:644764/1‑150 (MQ=255)                                                                                                    cAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTa                                                  >  1:927334/1‑150 (MQ=255)                                                                                                        ccTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCa                                              <  1:878593/150‑1 (MQ=255)                                                                                                              attcagacgactgaaatggcTGGGGCCGCTTTGCG‑CCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCa                                                     <  1:1085226‑M1/117‑1 (MQ=255)                                                                                                              attcagacgactgaaatggcTGGGGCCGCTTTGCG‑CCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCa                                                     >  2:1085226‑M1/21‑137 (MQ=255)                                                                                                                aGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCtttt                                      <  2:927334/150‑1 (MQ=255)                                                                                                                 gCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTg                                     <  2:668302/150‑1 (MQ=255)                                                                                                                     ccTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCaaa                                 >  2:1050075/1‑150 (MQ=255)                                                                                                                      gactgaaatggcTGGGGCCGCTTTGCG‑CCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCa                                                     >  1:307823‑M1/13‑129 (MQ=255)                                                                                                                      gactgaaatggcTGGGGCCGCTTTGCG‑CCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCa                                                     <  2:307823‑M1/117‑1 (MQ=255)                                                                                                                         tgaaatggcTGGGGCCGCTTTGCG‑CCCCATCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCAAAACTg                             <  2:1183810‑M1/141‑1 (MQ=255)                                                                                                                            tCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCAAAACTGGCa                          >  1:1023855/1‑150 (MQ=255)                                                                                                                                 gctggggccgctttgcgccccaGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCAAAACTGGCACGcc                      >  2:61733‑M2/23‑150 (MQ=255)                                                                                                                                   tggggccgctttgcgccccaGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCAAAAc                               <  2:607943‑M2/119‑1 (MQ=255)                                                                                                                                   tggggccgctttgcgccccaGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCAAAAc                               >  1:607943‑M2/21‑139 (MQ=255)                                                                                                                                       C‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCAc                                                                 >  1:184810‑M1/1‑100 (MQ=255)                                                                                                                                       C‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCAc                                                                 <  2:184810‑M1/100‑1 (MQ=255)                                                                                                                                             aGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCAAAACTGGCACGCCCCCTGCAATAAg          <  2:846348/150‑1 (MQ=255)                                                                                                                                             aGCGGCCCCAGCCATTTCAGTAGTCTGAATGCACAGTTCCTAAGACCGCTGCACCGGAAGAAGGCACAAAACGGCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCAAAACTGGCACGCCCCCTGCAATAAg          >  2:740179/1‑150 (MQ=255)                                                                                                                                                     caGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGTCTTTTGCAAAACTGGCACGCCCCCTGCAATAAGCAATACAt  >  1:68862‑M2/3‑150 (MQ=255)                                                                                                                                                       |                                                                                                                                                    AGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGC‑GCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCAAAACTGGCACGCCCCCTGCAATAAGCAATACAT  >  NC_002947/5758088‑5758384

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.