New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5786485 =	47 (1.040)	4 (0.090)	4/240	NT	8.4%	coding (1433/1461 nt)	PP_5068	hypothetical protein
	?	NC_002947	5786506 =	42 (0.960)					coding (1454/1461 nt)	PP_5068	hypothetical protein

CGCAACTACCTGGCGCAGAAAGCCATCGAAGCGGCCGAGGCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACA  >  NC_002947/5786340‑5786632                                                                                                                                                  |                                                                                                                                                    cgcAACTACCTGGCGCAGAAAGCCATCGAAGCGGCCGAGGCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCAc                                                                                                                                                 >  2:1088480/1‑150 (MQ=255)       tACCTGGCGCAGAAAGCCATCGAAGCGGCCGAGGCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGaa                                                                                                                                           <  1:15572/150‑1 (MQ=255)         ccTGGCGCAGAAAGCCATCGAAGCGGCCGAGGCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCGTTCGAGGAACAGCACGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAAt                                                                                                                                         >  1:552169/1‑150 (MQ=255)             gcgcAGAAAGCCATCGAAGCGGCCGAGGCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAgc                                                                                                                                     <  1:268695/150‑1 (MQ=255)              cgcAGAAAGCCATCGAAGCGGCCGAGGCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAgct                                                                                                                                    <  1:386757/150‑1 (MQ=255)                cAGCAAGCAAACGAAGCGGCCGAGGAGGGCGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAgctgc                                                                                                                                  <  1:253328/150‑1 (MQ=255)                cAGAAAGCCATCGAAGCGGCCGAGGCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAgctgc                                                                                                                                  <  1:664306/150‑1 (MQ=255)                   aaaGCCATCGAAGCGGCCGAGGCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGctct                                                                                                                               <  2:326065/150‑1 (MQ=255)                       ccATCGAAGCGGCCGAGGCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAg                                                                                                                                      <  1:344383/139‑1 (MQ=255)                       ccATCGAAGCGGCCGAGGCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAg                                                                                                                                      >  2:344383/1‑139 (MQ=255)                         aTCGAAGCGGCCGAGGCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGa                                                                                                                         >  2:714026/1‑150 (MQ=255)                          tCGAAGCGGCCGAGGCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCCGGCCTTTCGAGGAACAGCCCGGGCTGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGAt                                                                                                                        >  1:489099/1‑150 (MQ=255)                            gAAGCGGCCGAGGCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTa                                                                                                                      <  2:21845/150‑1 (MQ=255)                             aaGCGGCCGAGGCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAg                                                                                                                     >  2:856484/1‑150 (MQ=255)                                  gCCGAGGCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCg                                                                                                                >  2:790651/1‑150 (MQ=255)                                           ggggACTACCGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCtgtg                                                                                                       <  1:1091348/150‑1 (MQ=255)                                           ggggACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCtgtg                                                                                                       <  2:787823/150‑1 (MQ=255)                                               aCTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTCCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAg                                                                                                   <  1:434610/150‑1 (MQ=255)                                                 tACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCg                                                                                                 >  2:598258/1‑150 (MQ=255)                                                 tACAGTGAAGTTCGACGGCTGAACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACTGCCGGAGTGGGGCAAGCAACAGGAAATCAGCTGCTATTCCTGATTAGCGCCGAATCATGTGGGAGCg                                                                                                 >  1:444285/1‑150 (MQ=255)                                                   cAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCggg                                                                                               >  2:360241/1‑150 (MQ=255)                                                    aGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGc                                                                                              >  1:923527/1‑150 (MQ=255)                                                       gAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCt                                                                                                                                               >  2:1126193/1‑98 (MQ=255)                                                       gAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCt                                                                                                                                               <  1:1126193/98‑1 (MQ=255)                                                                             tCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAAc                                                                          >  1:716517/1‑145 (MQ=255)                                                                             tCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAAc                                                                          <  2:716517/145‑1 (MQ=255)                                                                              ccTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATg                                                                    <  1:790651/150‑1 (MQ=255)                                                                                 ggCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGAt                                                                 <  1:1088480/150‑1 (MQ=255)                                                                                     catcacgttgcctgcttcgcgggcacgcccgctcccacaggattcggcgctaatcaggaagag                                                                                                                                                    <  1:1016564‑M1/2‑1 (MQ=255)                                                                                     catcacgttgcctgcttcgcgggcacgcccgctcccacaggattcggcgctaatcaggaagag                                                                                                                                                    >  2:1016564‑M1/62‑63 (MQ=255)                                                                                       gCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCt                                                                                                                                               >  2:581132/1‑66 (MQ=255)                                                                                       gCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCt                                                                                                                                               <  1:581132/66‑1 (MQ=255)                                                                                          tttCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGc                                                        >  1:911740/1‑150 (MQ=255)                                                                                            ttgcctgctttgcgggcacgcccgctcccacaggattcggcgctaatcaggaagAGCACCTGGAAATCAGCTGctc                                                                                                                                >  2:868748‑M1/55‑76 (MQ=255)                                                                                            ttgcctgcttcgcgggcacgcccgctcccacaggattcggcgctaatcaggaagAGCACCTGGAAATCAGCTGctc                                                                                                                                <  1:868748‑M1/22‑1 (MQ=255)                                                                                                 gAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCCTCGCCg                                                 <  2:923527/150‑1 (MQ=255)                                                                                                       ctcGGGATGCCAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTc                                           <  2:552169/148‑1 (MQ=255)                                                                                                          gggATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTcgcg                                        <  1:708274/150‑1 (MQ=255)                                                                                                            gATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCCACGTGCTGGATTGCACCGGCTTCGCCGGTGTTCGTggg                                      <  2:620569/150‑1 (MQ=255)                                                                                                             acgcccgctcccacaggattcggcgctaatcaggaagAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATc                                                                                                            >  1:555656‑M1/38‑79 (MQ=255)                                                                                                             acgcccgctcccacaggattcggcgctaatcaggaagAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATc                                                                                                            <  2:555656‑M1/42‑1 (MQ=255)                                                                                                               gCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCAc                                   >  1:531953/1‑150 (MQ=255)                                                                                                                 aaGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGc                                 >  2:676328/1‑150 (MQ=255)                                                                                                                  aGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGcc                                <  1:598258/150‑1 (MQ=255)                                                                                                                     cTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTGCCGGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGCTTGCACCGGCTTCGCCGGTGGTCGCGGGCACGCCCGc                             >  2:169765/1‑150 (MQ=255)                                                                                                                      tACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAg                                                                                  <  2:635802/96‑1 (MQ=255)                                                                                                                      tACGCCGAGCGACCGCCGGAGTGGGACAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAg                                                                                  >  1:635802/1‑96 (MQ=255)                                                                                                                            gAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGAtt                                                                <  1:483926/108‑1 (MQ=255)                                                                                                                            gAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGAtt                                                                >  2:483926/1‑108 (MQ=255)                                                                                                                            gAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCcaca                      >  1:1092383/1‑150 (MQ=255)                                                                                                                                     ccgGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCg             <  2:531953/150‑1 (MQ=255)                                                                                                                                        gAGTGGCGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTCGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGa          <  1:714026/150‑1 (MQ=255)                                                                                                                                         aGTTGGGCAAGCACCTGGAAATCAGCTGCTCGTCCTGATTAGCCCCGAATCCTGTGGGAGCGCGCTTGCCCGCGAAGCAGGCAACGTGATGCATTGCACCGGCTTCAGCGATGTTCGCGGGCCCTCCCGCTCCCACAAGTAAAcctgtaa         <  2:444285/150‑6 (MQ=25)                                                                                                                                         aGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGACAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGaa         <  2:489099/150‑1 (MQ=255)                                                                                                                                              ggCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCaa    <  1:360241/150‑1 (MQ=255)                                                                                                                                              ggCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCaa    >  1:724233/1‑150 (MQ=255)                                                                                                                                                cAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAaca  <  2:877959/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CGCAACTACCTGGCGCAGAAAGCCATCGAAGCGGCCGAGGCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACA  >  NC_002947/5786340‑5786632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.