New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5786485 =	47 (1.040)	4 (0.090)	4/240	NT	8.4%	coding (1433/1461 nt)	PP_5068	hypothetical protein
	?	NC_002947	5786506 =	42 (0.960)					coding (1454/1461 nt)	PP_5068	hypothetical protein

AAAGCCATCGAAGCGGCCGAGGCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATG  >  NC_002947/5786358‑5786641                                                                                                                                                     |                                                                                                                                        aaaGCCATCGAAGCGGCCGAGGCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGctct                                                                                                                                        <  2:326065/150‑1 (MQ=255)       aTCGAAGCGGCCGAGGCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGa                                                                                                                                  >  2:714026/1‑150 (MQ=255)        tCGAAGCGGCCGAGGCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCCGGCCTTTCGAGGAACAGCCCGGGCTGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGAt                                                                                                                                 >  1:489099/1‑150 (MQ=255)          gAAGCGGCCGAGGCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTa                                                                                                                               <  2:21845/150‑1 (MQ=255)           aaGCGGCCGAGGCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAg                                                                                                                              >  2:856484/1‑150 (MQ=255)                gCCGAGGCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCg                                                                                                                         >  2:790651/1‑150 (MQ=255)                         ggggACTACCGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCtgtg                                                                                                                <  1:1091348/150‑1 (MQ=255)                         ggggACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCtgtg                                                                                                                <  2:787823/150‑1 (MQ=255)                             aCTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTCCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAg                                                                                                            <  1:434610/150‑1 (MQ=255)                               tACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCg                                                                                                          >  2:598258/1‑150 (MQ=255)                               tACAGTGAAGTTCGACGGCTGAACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACTGCCGGAGTGGGGCAAGCAACAGGAAATCAGCTGCTATTCCTGATTAGCGCCGAATCATGTGGGAGCg                                                                                                          >  1:444285/1‑150 (MQ=255)                                 cAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCggg                                                                                                        >  2:360241/1‑150 (MQ=255)                                  aGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGc                                                                                                       >  1:923527/1‑150 (MQ=255)                                                           tCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAAc                                                                                   <  2:716517/145‑1 (MQ=255)                                                           tCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAAc                                                                                   >  1:716517/1‑145 (MQ=255)                                                            ccTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATg                                                                             <  1:790651/150‑1 (MQ=255)                                                               ggCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGAt                                                                          <  1:1088480/150‑1 (MQ=255)                                                                        tttCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGc                                                                 >  1:911740/1‑150 (MQ=255)                                                                          ttgcctgctttgcgggcacgcccgctcccacaggattcggcgctaatcaggaagAGCACCTGGAAATCAGCTGctc                                                                                                                                         >  2:868748‑M1/55‑76 (MQ=255)                                                                          ttgcctgcttcgcgggcacgcccgctcccacaggattcggcgctaatcaggaagAGCACCTGGAAATCAGCTGctc                                                                                                                                         <  1:868748‑M1/22‑1 (MQ=255)                                                                               gAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCCTCGCCg                                                          <  2:923527/150‑1 (MQ=255)                                                                                     ctcGGGATGCCAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTc                                                    <  2:552169/148‑1 (MQ=255)                                                                                        gggATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTcgcg                                                 <  1:708274/150‑1 (MQ=255)                                                                                          gATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCCACGTGCTGGATTGCACCGGCTTCGCCGGTGTTCGTggg                                               <  2:620569/150‑1 (MQ=255)                                                                                           acgcccgctcccacaggattcggcgctaatcaggaagAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATc                                                                                                                     <  2:555656‑M1/42‑1 (MQ=255)                                                                                           acgcccgctcccacaggattcggcgctaatcaggaagAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATc                                                                                                                     >  1:555656‑M1/38‑79 (MQ=255)                                                                                             gCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCAc                                            >  1:531953/1‑150 (MQ=255)                                                                                               aaGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGc                                          >  2:676328/1‑150 (MQ=255)                                                                                                aGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGcc                                         <  1:598258/150‑1 (MQ=255)                                                                                                   cTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTGCCGGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGCTTGCACCGGCTTCGCCGGTGGTCGCGGGCACGCCCGc                                      >  2:169765/1‑150 (MQ=255)                                                                                                    tACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAg                                                                                           <  2:635802/96‑1 (MQ=255)                                                                                                    tACGCCGAGCGACCGCCGGAGTGGGACAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAg                                                                                           >  1:635802/1‑96 (MQ=255)                                                                                                          gAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGAtt                                                                         <  1:483926/108‑1 (MQ=255)                                                                                                          gAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGAtt                                                                         >  2:483926/1‑108 (MQ=255)                                                                                                          gAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCcaca                               >  1:1092383/1‑150 (MQ=255)                                                                                                           gattcggcgctaatcaggaagagcagctgatttccaggtgctCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGt                                                                                                     >  1:555656‑M2/43‑79 (MQ=255)                                                                                                           gattcggcgctaatcaggaagagcagctgatttccaggtgctCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGt                                                                                                     <  2:555656‑M2/37‑1 (MQ=255)                                                                                                                   ccgGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCg                      <  2:531953/150‑1 (MQ=255)                                                                                                                      gAGTGGCGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTCGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGa                   <  1:714026/150‑1 (MQ=255)                                                                                                                       aGTTGGGCAAGCACCTGGAAATCAGCTGCTCGTCCTGATTAGCCCCGAATCCTGTGGGAGCGCGCTTGCCCGCGAAGCAGGCAACGTGATGCATTGCACCGGCTTCAGCGATGTTCGCGGGCCCTCCCGCTCCCACAAGTAAAcctgtaa                  <  2:444285/150‑6 (MQ=25)                                                                                                                       aGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGACAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGaa                  <  2:489099/150‑1 (MQ=255)                                                                                                                            ggCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCaa             <  1:360241/150‑1 (MQ=255)                                                                                                                            ggCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCaa             >  1:724233/1‑150 (MQ=255)                                                                                                                              cAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAaca           <  2:877959/150‑1 (MQ=255)                                                                                                                               gagcagctgatttccaggtgctCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCaa                                                                                    <  1:868748‑M2/54‑1 (MQ=255)                                                                                                                               gagcagctgatttccaggtgctCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCAAAGCAGGCaa                                                                                    >  2:868748‑M2/23‑76 (MQ=255)                                                                                                                                 GCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCa                                             >  2:277268‑M1/1‑113 (MQ=255)                                                                                                                                 GCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCa                                             <  1:277268‑M1/113‑1 (MQ=255)                                                                                                                                 GCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCg        >  2:724233‑M1/1‑150 (MQ=255)                                                                                                                                      tGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCt                                     >  1:879537/1‑116 (MQ=255)                                                                                                                                      tGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCt                                     <  2:879537/116‑1 (MQ=255)                                                                                                                                      tGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAAcc                       >  2:1008504/1‑130 (MQ=255)                                                                                                                                      tGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAAcc                       <  1:1008504/130‑1 (MQ=255)                                                                                                                                       ggAAATCAGCTGATCTTCCTGATTAGCGCCGAATCCTGTGGGCGCGGGTGGGCGCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACGGGAGATg  >  2:471671/1‑150 (MQ=38)                                                                                                                                               gctgctCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCaa             >  1:464946/1‑131 (MQ=255)                                                                                                                                               gctgctCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCaa             <  2:464946/131‑1 (MQ=255)                                                                                                                                                   ctCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATg                                                                             >  2:1016564‑M2/3‑63 (MQ=255)                                                                                                                                                   ctCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATg                                                                             <  1:1016564‑M2/61‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                        AAAGCCATCGAAGCGGCCGAGGCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATG  >  NC_002947/5786358‑5786641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.