New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1380504	42 (0.930)	8 (0.200)	8/224	NT	16.3%	intergenic (‑224/+38)	PP_1202/PP_t67	phospholipids modification protein/tRNA‑Met
	?	NC_002947	= 1380519	44 (1.080)					intergenic (‑239/+23)	PP_1202/PP_t67	phospholipids modification protein/tRNA‑Met

CAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAG  >  NC_002947/1380381‑1380659                                                                                                                                           |                                                                                                                                              cAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGgcggggtttgt                                                                                                                                    >  1:118877‑M2/1‑139 (MQ=255) cAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGgcggggtttgt                                                                                                                                    <  2:118877‑M2/150‑12 (MQ=255)           gCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGgcggggttt                                                                                                                                      <  1:884339‑M2/138‑10 (MQ=255)           gCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGgcggggttt                                                                                                                                      >  2:884339‑M2/1‑129 (MQ=255)              gggTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATg                                                                                                                       <  2:458765/150‑1 (MQ=255)               ggTTAAAGATAGTTCACCCTGGGCTCGACATCTCAAGCCTGCGGGTTGGCAGGAGGCGAGGGAAAAGCGACGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAatatcg                                                                                                                      <  2:1063080/150‑3 (MQ=255)                 ttAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGgcgg                                                                                                                                           <  2:962689‑M2/127‑5 (MQ=255)                 ttAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGgcgg                                                                                                                                           >  1:962689‑M2/1‑123 (MQ=255)                 ttAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGtt                                                                                                                    >  1:1032197/1‑150 (MQ=255)                    aaGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGTAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCg                                                                                                                 <  1:88131/150‑1 (MQ=255)                       aTAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGa                                                                                                              <  1:948248/150‑1 (MQ=255)                           ttCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTc                                                                                                                                  >  2:1111586/1‑126 (MQ=255)                           ttCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTc                                                                                                                                  <  1:1111586/126‑1 (MQ=255)                            tCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGTGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCgg                                                                                                         <  1:96779/150‑1 (MQ=255)                              aTCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGAt                                                                                                       <  1:582804/150‑1 (MQ=255)                                 cTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTg                                                                                                    >  1:108025/1‑150 (MQ=255)                                     gCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAACCCCCGC‑CTGTGTAAAAGCAGcgcggggtttgttgctttatac                                                                                                                         >  2:99975‑M2/1‑102 (MQ=255)                                     gCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGC‑CTGTGTAAAAGCAGcgcggggtttgttgctttatac                                                                                                                         <  1:99975‑M2/124‑23 (MQ=255)                                       aCGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACcg‑a                                                                                             >  1:775653/1‑150 (MQ=255)                                               tcAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTc                                                                                     >  1:198881/1‑150 (MQ=255)                                               tcAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGATTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTc                                                                                     <  2:168687/150‑1 (MQ=255)                                                 aaGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCgg                                                                                   <  2:1032197/150‑1 (MQ=255)                                                        cGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGa                                                                            >  1:192444/1‑150 (MQ=255)                                                           gTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGAGcc                                                                         <  2:775653/150‑1 (MQ=255)                                                             cggCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGAGCCcg                                                                       <  2:68317/149‑1 (MQ=255)                                                               gCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGAGCTGCTGTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGAGCCcgac                                                                     <  2:343281/150‑1 (MQ=255)                                                                 aTGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGAGCCcgacga                                                                   >  2:1021354/1‑150 (MQ=255)                                                                        gagggaAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGa                                                                                                              <  2:608164/101‑1 (MQ=255)                                                                        gagggaAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGa                                                                                                              >  1:608164/1‑101 (MQ=255)                                                                           ggaAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGgc                                                         >  2:1121573/1‑150 (MQ=255)                                                                            gaAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCggg                                                                                  <  2:27972/124‑1 (MQ=255)                                                                            gaAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCggg                                                                                  >  1:27972/1‑124 (MQ=255)                                                                                 tCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGaa                                                                                                  >  1:83688/1‑104 (MQ=255)                                                                                 tCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGaa                                                                                                  <  2:83688/104‑1 (MQ=255)                                                                                         acgaAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGCTTGCTTGAGCCGGATTTGAAACGCACGCGAATGAAGTT‑TGATTCCGGCGGTCTACCAGGCTGCTCCATCCcgcg                                           >  1:870576/1‑150 (MQ=255)                                                                                           gaAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTc                                         >  1:1196326/1‑150 (MQ=255)                                                                                                tCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGAGCCCGACGAGc                                                                 >  1:754565/1‑121 (MQ=255)                                                                                                tCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGAGCCCGACGAGc                                                                 <  2:754565/121‑1 (MQ=255)                                                                                                tCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTgg                                    >  2:269881/1‑150 (MQ=255)                                                                                                      atcgataAAGCAACAACAACGGAGAAGCTTTTAGTCAGGCGAGGTTTGTTTTGTTGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGa                              <  2:383700/146‑1 (MQ=11)                                                                                                           taAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGATCCATCCCGCGTCAGTGGGGCGGATTCtt                         >  1:383700/1‑149 (MQ=255)                                                                                                             aaGCAACAAACCCCGCGCTGCTTTTACACAGgcggggtttgttgctttatacctccctgactttcgtcgcctcgattttccctcccctcatgccaacccgcaggcttgagatgtcgtgcccaggatgaactatctttaaccctgccaagc                        <  1:344880‑M2/150‑120 (MQ=255)                                                                                                             aaGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATc                                                >  1:263414/1‑125 (MQ=255)                                                                                                             aaGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATc                                                <  2:263414/125‑1 (MQ=255)                                                                                                             aaGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGAtt                            >  1:1048464/1‑145 (MQ=255)                                                                                                             aaGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGAtt                            <  2:1048464/145‑1 (MQ=255)                                                                                                                 aacaaACCCCGCGCTGCTTTTACACAGgcggggtttgttgctttatacctccctgactttcgtcgcctcgattttccc                                                                                            <  2:987237‑M2/78‑52 (MQ=255)                                                                                                                 aacaaACCCCGCGCTGCTTTTACACAGgcggggtttgttgctttatacctccctgactttcgtcgcctcgattttccc                                                                                            >  1:987237‑M2/1‑27 (MQ=255)                                                                                                                 aacaaACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAgtgt                   <  2:1196326/150‑1 (MQ=255)                                                                                                                    aaaCCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCgg                                                                                                                >  2:828249/1‑55 (MQ=255)                                                                                                                    aaaCCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCgg                                                                                                                <  1:828249/55‑1 (MQ=255)                                                                                                                    aaaCCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGAGCCCGACGAACTACCAGGCTGGTCCATCCCGCGTCCGTGGGGGGGATTCTACAGtgtgtg                >  2:315829/1‑150 (MQ=255)                                                                                                                       ccccGCGCTGCTTTTACACAGgcggggtttgttgctttatacctccctgactttcgtcgcctcgattttccctcccctcatgccaacccgcaggcttgagatgtcgtgcccaggatgaactatctttaaccctgccaagccgctgcaaac              <  1:963554‑M2/150‑130 (MQ=255)                                                                                                                       ccccGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGACCCCGACGAGCTACCAGGGTGCTCCATCCCGCGTCAGTGGTGCGGATTCTACAGTGTGTGGtt             <  2:198881/150‑1 (MQ=255)                                                                                                                        cccGCGCTGCTTTTACACAGgcggggtttgttgcattatacgtccctgactttcggcgcctcgatttgccctcccctcctcaccacccgcaggctggagatgtcgtgcccaggatgaactatctttaaccccgccaagcccctgcaaacg             <  1:688203‑M2/150‑131 (MQ=255)                                                                                                                          cgcgCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGt          >  1:911181/1‑150 (MQ=255)                                                                                                                           gcgcTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTa         <  2:192444/150‑1 (MQ=255)                                                                                                                                  ttttACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGtgtgtg                <  2:1018044/136‑1 (MQ=255)                                                                                                                                  ttttACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGtgtgtg                >  1:1018044/1‑136 (MQ=255)                                                                                                                                   tttACACAGgcggggtttgttgctttatacctccctgactttcgtcgcctcgattttccctcccctcatgccaacccgcaggcttgagatgtcgtgcccaggatgaactatctttaaccctgccaagccgctgcaaacgcctgaggccgg  >  2:344880‑M2/1‑9 (MQ=255)                                                                                                                                           |                                                                                                                                              CAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCG‑ACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAG  >  NC_002947/1380381‑1380659

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.