New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1558189 =	38 (0.840)	4 (0.090)	4/238	NT	9.4%	coding (26/993 nt)	PP_1368	glycosyltransferase domain‑containing protein
	?	NC_002947	1558211 =	41 (0.950)					coding (4/993 nt) coding (732/732 nt)	PP_1368 PP_1369	glycosyltransferase domain‑containing protein hypothetical protein

CCCAGCACAACAGAATCATGCCTAGTAGCATGAGCAGCAGGTGCGGGTCGAACCGGCTCAGCCTCGGCAGCAGCTCGCTACCACCCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGTCTCTCCAGCGTGCGCAACCAATAGTCACGGGATGAGCGATGGCGCATGTCTACAGGGTGCAGTCCCAAGCGCAACGTGCTCGC  >  NC_002947/1558067‑1558360                                                                                                                                                 |                                                                                                                                                       cccAGCACAACAGAATCATGCCTAGTAGCATGAGCAGCAGGTGCGGGTCGAACCGGCTCAGCCTCGGCAGCAGCTCGCTACCACCCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCAtgc                                                                                                                                                   >  1:969174/1‑150 (MQ=255)  ccAGCACAACAGAATCATGCCTAGTAGCATGAGCAGCAGGTGCGGGTCGAACCGGCTCAGCCTCGGCAGCAGCTCGCTACCACCCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCAtgct                                                                                                                                                  >  1:873069/1‑150 (MQ=255)       acaacaGAATCATGCCTAGTAGCATGAGCAGCAGGTGCGGGTCGAACCGGCTCAGCCTCGGCAGCAGCTCGCTACCACCCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGcccc                                                                                                                                             <  1:1138093/150‑1 (MQ=255)        caacgGAATCATGCATAGTGGCATGCGCAGCCCGTCGCAGTCGACTAGGGGCAGCCTCTGCAGCAGCTCGCTACCACCCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGccccc                                                                                                                                            <  2:11449/150‑1 (MQ=255)         aacaGAATCATGCCTAGTAGCATGAGCAGCAGGTGCGGGTCGAACCGGCCCCAGCTGGTCAGCAGCTCGCTACCACCCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCt                                                                                                                                           >  1:991174/1‑150 (MQ=255)                      cTAGTAGCATGAGCAGCAGGTGCGGGTCGAACCGGCTCAGCCTCGGCAGCAGCTCGCTACCACCCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCACTccag‑cca                                                                                                                             <  2:834033/150‑1 (MQ=255)                          tagCATGAGCAGCAGGTGCGGGTCGAACCGGCTCAGCCTCGGCAGCAGCTCGCTACCACCCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCa                                                                                                                         <  2:969174/150‑1 (MQ=255)                              aTGAGCAGCAGGTGCGGGTCGAACCGGCTCAGCCTCGGCAGCAGCTCGCTACCACCCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAGACCAGGcctgg                                                                                                                      >  2:1143109/1‑146 (MQ=255)                                gAGCAGCAGGTGCGGGTCGAACCGGCTCAGCCTCGGCAGCAGCTCGCTACCACCCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTg                                                                                                                   <  1:72861/150‑1 (MQ=255)                                gAGCAGCAGGTGCGGGTCGAACCGGCTCAGCCTCGGCAGCAGCTCGCTACCACCCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTg                                                                                                                   <  1:1136032/150‑1 (MQ=255)                                gAGCAGCAGGTGCGGGTCGAACCGGCTCAGCCTCGGCAGCAGCTCGCTACCACCCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTg                                                                                                                   <  2:425230/150‑1 (MQ=255)                                gAGCAGCAGGTGCGGGTCGAACCGGCTCAGCCTCGGCAGCAGCTCGCTACCACCCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTg                                                                                                                   <  2:873069/150‑1 (MQ=255)                                                tCGAACCGGCTCAGCCTCGGCAGCAGCTCGCTACCACCCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGc                                                                                                   <  1:1016171/150‑1 (MQ=255)                                                   aaCCGGCTCAGCCTCGGCAGCAGCTCGCTACCACCCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CAAGGCAGACTTGTTCAGCGGTTCGCGGCCAt                                                                                                >  1:20756/1‑150 (MQ=255)                                                     gagactgttgaaggatggccgcgaaccgctgaccaagtctgcctggctggagcgccagggggcagcatgaAGCGCCAGCCAGGCCCAGCGCTTCAtg                                                                                                                                                    >  1:405088‑M1/71‑97 (MQ=255)                                                     gagactgttgaaggatggccgcgaaccgctgaccaagtctgcctggctggagcgccagggggcagcatgaAGCGCCAGCCAGGCCCAGCGCTTCAtg                                                                                                                                                    <  2:405088‑M1/27‑1 (MQ=255)                                                       ggCTCAGCCTCGGCAGCAGCTCGCTACCACCCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCtt                                                                                            <  1:1164429/150‑1 (MQ=255)                                                          tCAGCCTCGGCAGCAGCTCGCTACCACCCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCAAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCaa                                                                                         <  1:75581/150‑1 (MQ=255)                                                           cAGCCTCGGCAGCAGCTCGCTACCACCCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAAc                                                                                        >  2:608195/1‑150 (MQ=255)                                                                tCGGCAGCAGCTCGCTACCACCCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTc                                                                                                        <  1:1011786/129‑1 (MQ=255)                                                                tCGGCAGCAGCTCGCTACCACCCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTc                                                                                                        >  2:1011786/1‑129 (MQ=255)                                                                 ggatggccgcgaaccgctgaccaagtctgcctggctggagcgccagggggcagcatgaAGCGCCAGCCAGGCCCAGCGCTTCAtgc                                                                                                                                                   <  1:1011082‑M1/28‑1 (MQ=255)                                                                 ggatggccgcgaaccgctgaccaagtctgcctggctggagcgccagggggcagcatgaAGCGCCAGCCAGGCCCAGCGCTTCAtgc                                                                                                                                                   >  2:1011082‑M1/59‑86 (MQ=255)                                                                 cGGCAGCAGCTCGCTGCCACCCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGtctc                                                                                  >  1:777404/1‑150 (MQ=255)                                                                          cTCGCTACCACCCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCa                                                                                                               >  2:405678/1‑112 (MQ=255)                                                                          cTCGCTACCACCCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCa                                                                                                               <  1:405678/112‑1 (MQ=255)                                                                                accgccCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGTCTCTCCAGCGTGCGCAAc                                                                   <  1:68762/150‑1 (MQ=255)                                                                                     ccAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGtctctc                                                                                >  2:151389/1‑132 (MQ=255)                                                                                     ccAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGtctctc                                                                                <  1:151389/132‑1 (MQ=255)                                                                                     ccAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGTCTCTCCAGCGTGCGCAACCAATa                                                              >  1:903190/1‑150 (MQ=255)                                                                                      cAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGTCTCTCCAGCGTGCGCAACCAATAg                                                             >  2:487473/1‑150 (MQ=255)                                                                                       tgcagcGCTGGGGCCAGCGTTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGTCTCTCCAGCGTGCGCAACCAATAGt                                                            >  2:1142167/6‑150 (MQ=255)                                                                                           aCGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGTCTCTCCAGCGTGCGCAACCAATAGTCAcc                                                        <  2:903190/150‑2 (MQ=255)                                                                                                   aCCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGTCTCTCCAGCGTGCGCAACCAATAGTCACGGGATGAGc                                                >  2:45564/1‑150 (MQ=255)                                                                                                              aCCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGTCTCTCCAGCGTGCGCAACCAATAGTCACGGGATGAGCGATGGCGCATg                                     >  1:1162646/1‑150 (MQ=255)                                                                                                               cccAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCACCTGGCGCTCCAC‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGTCTCTCCAGCGTGCGCAACCAATAGTCACGGGATGAGCGATGGCGCATGt                                    >  2:503870/1‑150 (MQ=255)                                                                                                                 cAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGTCTCTCCAGCGTGCGCAACCAATAGTCACGGGATGAGCGATGGCGCATGTCt                                  >  2:1083478/1‑150 (MQ=255)                                                                                                                     gcatgaagcgctgggcctggctggcgctTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATcc                                                                                              >  2:1011082‑M2/29‑86 (MQ=255)                                                                                                                     gcatgaagcgctgggcctggctggcgctTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATcc                                                                                              <  1:1011082‑M2/58‑1 (MQ=255)                                                                                                                      catgaagcgctgggcctggctggcgctTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGtctc                                                                                  <  2:405088‑M2/70‑1 (MQ=255)                                                                                                                      catgaagcgctgggcctggctggcgctTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGtctc                                                                                  >  1:405088‑M2/28‑97 (MQ=255)                                                                                                                      aTGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGTCTCTCCAGCGTGCGCAACCAATAGTCACGGGATGAGCGATGGCGCATGTCTACAgg                             <  1:45564/150‑1 (MQ=255)                                                                                                                          cagcgccagcCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAg                                                                                      >  1:658997/1‑89 (MQ=255)                                                                                                                          cagcgccagcCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAg                                                                                      <  2:658997/89‑1 (MQ=255)                                                                                                                             CGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGTCTCTCCAGCGTGCGCAACCAATAGTCACGGGATGAGCGATGGCGCATGTCTACAGGGTGCAGt                      >  1:1142167‑M1/1‑150 (MQ=255)                                                                                                                                cagccagGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGAGTTGGACAGCGCTTCGCGGCCATCCTTCAACAGTCTCTCCAGCGTGCGCGACCAATAGTCACGGGATGAGCGATGAAGCATGTCTACAGGGTGCAGTccc                   >  2:201316/1‑150 (MQ=255)                                                                                                                                caaccagGACCAGCGCTTAATGCTGCACCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGGGGTTCGCGGCAATCCTTCAACAGTCTCTCCAACATGCGCAACCAAAAATCACGGGATAAGCGATAGCGAATGTCTACAGGGTGGAGTccc                   >  2:20365/4‑150 (MQ=255)                                                                                                                                  gccagGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGTCTCTCCAGCGTGCGCAACCAATAGTCACGGGATGAGCGATGGCGCATGTCTACAGGGTGCAGTCCCaa                 >  2:664233/1‑150 (MQ=255)                                                                                                                                    cagGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGTCTCTCCAGCGTGCGCAACCAATAGTCACGGGATGAGCGATGGCGCATGTCTACAGGGTGCAGTCCCAAgc               <  1:658302/150‑1 (MQ=255)                                                                                                                                     agGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGTCTCTCCAGCGTGCGCAACCAATAGTCACGGGATGAGCGATGGCGCATGTCTACAGGTTGCAGTCCCAAgca              >  1:1153273/1‑149 (MQ=255)                                                                                                                                         ccAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGTCTCTCCAGCGTg                                                                         >  2:548637/1‑87 (MQ=255)                                                                                                                                         ccAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGTCTCTCCAGCGTg                                                                         <  1:548637/87‑1 (MQ=255)                                                                                                                                                tTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGTCTCTCCAGCGTGCGCAACCAATAGTCACGGGATGAGCGATGGCGCATGTCTACAGGGTGCAGTCCCAAGCGCAACGTGCTCg   >  1:927872‑M2/2‑150 (MQ=255)                                                                                                                                                 tCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGTCTCTCCAGCGTGCGCAACCAATAGTCACGGGATGAGCGATGGCGCATGTCTACAGGGTGCAGTCCCAAGCGCAACGTGCTcgc  >  1:142891/1‑150 (MQ=255)                                                                                                                                                 |                                                                                                                                                       CCCAGCACAACAGAATCATGCCTAGTAGCATGAGCAGCAGGTGCGGGTCGAACCGGCTCAGCCTCGGCAGCAGCTCGCTACCACCCAGCAACGCTGGCACCAGCGCTGCACCCAGCAATGCCAGCGCCAGCCAGGCCCAGCGCTTCATGCTGCCCCCTGGCGCTCCAG‑CCAGGCAGACTTGGTCAGCGGTTCGCGGCCATCCTTCAACAGTCTCTCCAGCGTGCGCAACCAATAGTCACGGGATGAGCGATGGCGCATGTCTACAGGGTGCAGTCCCAAGCGCAACGTGCTCGC  >  NC_002947/1558067‑1558360

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.