New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2063975 | 50 (1.110) | 6 (0.140) | 5/238 | NT | 11.0% | coding (169/333 nt) | PP_1840 | hypothetical protein |
? | NC_002947 | = 2063996 | 49 (1.130) | coding (190/333 nt) | PP_1840 | hypothetical protein |
GTTTCGACTTCACCCAGATCCACCCCATCGAGTTCTATGCCGTATTCCCGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTC > NC_002947/2063865‑2064130 | gTTTCGACTTCACCCAGATCCACCCCATCGAGTTCTATGCCGTATTCCCGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGa < 2:76171/150‑1 (MQ=255) gACTTCACCCAGATCCACCCCATCGAGTTCTATGCCGTATTCCCGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAg > 1:769280/1‑150 (MQ=255) gACTTCACCCAGATCCACCCCATCGAGTTCTATGCCGTATTCCCGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAg > 1:768972/1‑150 (MQ=255) ttCACCCAGATCCACCCCATCGAGTTCTATGCCGTATTCCCGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGcctgg < 2:130516‑M2/129‑6 (MQ=255) ttCACCCAGATCCACCCCAACGAGTTCTATGCCGTATTCCCGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGcctgg > 1:130516‑M2/1‑124 (MQ=255) aCCCAGATCCACCCCATCGAGTTCTATGCCGTATTCCCGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGaa < 1:791166/135‑1 (MQ=255) aCCCAGATCCACCCCATCGAGTTCTATGCCGTATTCCCGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGaa > 2:791166/1‑135 (MQ=255) ccAGATCCACCCCATCGAGTTCTATGCCGTATTCCCGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTa > 2:535566/1‑150 (MQ=255) cATCGAGTTCTATGCCGTATTCCCGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGcctg < 2:200248‑M2/111‑5 (MQ=255) cATCGAGTTCTATGCCGTATTCCCGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGcctg > 1:200248‑M2/1‑107 (MQ=255) cATCGAGTTCTATGCCGTATTCCCGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGcc > 2:488083‑M2/1‑107 (MQ=255) cATCGAGTTCTATGCCGTATTCCCGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGcc < 1:488083‑M2/109‑3 (MQ=255) cATCGAGTTCTATGCCGTATTCCCGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATgg > 1:1174414/1‑150 (MQ=255) cGAGTTCTATGCCGTATGCCGGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCgg < 2:272274/150‑1 (MQ=255) gAGTTCTATGCCGTATTCCCGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCggg > 2:1189072/1‑150 (MQ=255) ttCTATGCCGTATTCCCGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTTAGCAAGGTCATGTACGCCACCCATGGCGGGAtt < 1:1189072/150‑1 (MQ=255) ttCTATGCCGTATTCCCGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGAtt > 2:139764/1‑150 (MQ=255) tCTATGCCGTATTCCCGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTg < 2:519085/150‑1 (MQ=255) tATGCCGTATTCCCGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGc < 1:535566/150‑1 (MQ=255) ccGTATTCCCGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACt > 2:748976/1‑150 (MQ=255) ccGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAagag < 2:768972/150‑1 (MQ=255) ccGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAagag < 2:1128518/150‑1 (MQ=255) ccGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAagag < 2:769280/150‑1 (MQ=255) gAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCTTTc > 1:456395/1‑150 (MQ=255) aGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGa > 1:933311/1‑150 (MQ=255) gCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGcct < 2:183252‑M2/73‑4 (MQ=255) gCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGcct > 1:183252‑M2/1‑70 (MQ=255) cccGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTgg < 1:139764/150‑1 (MQ=255) ccGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCt < 2:422981/78‑1 (MQ=255) ccGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCt > 1:422981/1‑78 (MQ=255) gtcgtGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTgg < 1:594238/147‑1 (MQ=255) gtcgtGCAGCCGGGCAGGTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTgg > 2:594238/1‑147 (MQ=255) ggCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCgg < 1:140468/100‑1 (MQ=255) ggCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCgg > 2:140468/1‑100 (MQ=255) ggCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATgggg > 2:8713/1‑150 (MQ=255) aGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTg > 2:319152/1‑150 (MQ=255) gTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGATGa < 2:322844/150‑1 (MQ=255) tttCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAg > 2:397782/1‑150 (MQ=255) gcgGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTc > 2:974842/1‑116 (MQ=255) gcgGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTc < 1:974842/116‑1 (MQ=255) ggggAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGaa > 1:632991/1‑150 (MQ=255) aaTCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGt < 1:416439/150‑1 (MQ=255) aaTCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGt < 2:933311/150‑1 (MQ=255) aTCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTg < 1:276415/150‑1 (MQ=255) gCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTgggg > 1:844612/1‑150 (MQ=255) cTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGcctgggcattgagcgattccccgcgaaactgcccggctgcacgacgggcccctgcttcgtccgggaatacggcatagaactcgatggggtggatctgggtgaagtcgaaaccgcct < 2:954368‑M2/150‑117 (MQ=255) cTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGc > 2:324340/1‑150 (MQ=255) tGCCCAGGTGAAGGAGCTTGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGc < 2:469849/63‑1 (MQ=255) tGCCCAGGTGAAGGAGCTGGGCGACGGGGcctggcattgagcgattccccgcgaaactgcccggctgcacgacgggcccctgcttcgtccgggaatacggcatagaactcgatggggtggatctgggtgaa > 2:1084459‑M2/1‑29 (MQ=255) tGCCCAGGTGAAGGAGCTGGGCGACGGGGcctggcattgagcgattccccgcgaaactgcccggctgcacgacgggcccctgcttcgtccgggaatacggcatagaactcgatggggtggatctgggtgaa < 1:1084459‑M2/131‑103 (MQ=255) tGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGc > 1:469849/1‑63 (MQ=255) tGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTcaa < 2:1174414/150‑1 (MQ=255) gCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTcaag < 2:632991/150‑1 (MQ=255) ccAGGTGAAGGAGCTGGGCGACGGGGcctgggcattgagcgattccccgcgaaactgcccggctgcacgacgggcccctgcttcgtccgggaatacggcatagaactcgatggggt > 1:891828‑M2/1‑26 (MQ=255) ccAGGTGAAGGAGCTGGGCGACGGGGcctgggcattgagcgattccccgcgaaactgcccggctgcacgacgggcccctgcttcgtccgggaatacggcatagaactcgatggggt < 2:891828‑M2/116‑91 (MQ=255) ccAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAg < 1:216879/127‑1 (MQ=255) ccAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAg > 2:216879/1‑127 (MQ=255) cAGGTGAAGGAGCTGGGCGACGGGGcctggcacctgggcattgagcgattccccgcgaaactgcccggctgcacgacgggcccctgcttcgtccgggaatacggcatagaactcgatggggtggatctgggtgaagtcgaaaccgcctgc < 1:749576‑M2/150‑126 (MQ=255) aGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATgggg < 2:1174721/120‑1 (MQ=255) aGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATgggg > 1:1174721/1‑120 (MQ=255) aaGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCt > 1:549801/1‑88 (MQ=255) aaGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCt < 2:549801/88‑1 (MQ=255) gAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTc < 2:181975/150‑1 (MQ=255) ggCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGc < 2:887298/126‑1 (MQ=255) ggCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGc > 1:887298/1‑126 (MQ=255) ggCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAagag > 1:547874/1‑130 (MQ=255) ggCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAagag < 2:547874/130‑1 (MQ=255) | GTTTCGACTTCACCCAGATCCACCCCATCGAGTTCTATGCCGTATTCCCGGACGAAGCAGGGGCCCGTCGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTC > NC_002947/2063865‑2064130 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |