New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2342921	46 (1.020)	6 (0.140)	6/238	NT	12.1%	coding (730/1254 nt)	PP_2058	porin
	?	NC_002947	= 2342940	43 (0.990)					coding (749/1254 nt)	PP_2058	porin

GCGGCCCAGCGTCTGGCGATTTCAGCTTCGCCGGTGCTGACTATGCCGTCAGCAAGCAACTGCGCCTGAGTTATTTCCATGGCGAGCTCGAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGTTCAGCGGCCAACTGTCGTACGCCCATTCCGGGCATACCGTCGGCGCAGGTTACCAGGTGCTCGATGG  >  NC_002947/2342793‑2343087                                                                                                                                                    |                                                                                                                                                    gcggcCCAGCGTCTGGCGATTTCAGCTTCGCCGGTGCTGACTATGCCGTCAGCAAGCAACTGCGCCTGAGTTATTTCCATGGCGAGCTCGAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGcg                                                                                                                                                   <  1:555138‑M2/150‑3 (MQ=255)  cggcCCAGCGTCTGGCGATTTCAGCTTCGCCGGTGCTGACTATGCCGTCAGCAAGCAACTGCGCCTGAGTTATTTCCATGGCGAGCTCGAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGcgt                                                                                                                                                  >  1:848449‑M2/1‑147 (MQ=255)  cggcCCAGCGTCTGGCGATTTCAGCTTCGCCGGTGCTGACTATGCCGTCAGCAAGCAACTGCGCCTGAGTTATTTCCATGGCGAGCTCGAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGcgt                                                                                                                                                  >  1:801512‑M2/1‑147 (MQ=255)      ccAGCGTCTGGCGATTTCAGCTTCGCCGGTGCTGACTATGCCGTCAGCAAGCAACTGCGCCTGAGTTATTTCCATGGCGAGCTCGAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTg                                                                                                                                              >  1:619980/1‑150 (MQ=255)       cAGCGTCTGGCGATTTCAGCTTCGCCGGTGCTGACTATGCCGTCAGCAAGCAACTGCGCCTGAGTTATTTCCATGGCGAGCTCGAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGa                                                                                                                                             >  1:860102/1‑150 (MQ=255)                gCGATTTCAGCTTCGCCGGTGCTGACTATGCCGTCAGCAAGCAACTGCGCCTGAGTTATTTCCATGGCGAGCTCGAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGAcc                                                                                                                                    >  1:855825/1‑150 (MQ=255)                  gATTTCAGCTTCGCCGGTGCTGACTATGCCGTCAGCAAGCAACTGCGCCTGAGTTATTTCCATGGCGAGCTCGAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTg                                                                                                                                  >  1:817972/1‑150 (MQ=255)                    tttCAGCTTCGCCGGTGCTGACTATGCCGTCAGCAAGCAACTGCGCCTGAGTTATTTCCATGGCGAGCTCGAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCg                                                                                                                                >  2:252921/1‑150 (MQ=255)                          cTTCGCCGGTGCTGACTATGCCGTCAGCAAGCAACTGCGCCTGAGTTATTTCCATGGCGAGCTCGAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACtt                                                                                                                          <  2:817972/150‑1 (MQ=255)                               ccGGTGCTGACTATGCCGTCAGCAAGCAACTGCGCCTGAGTTATTTCCATGGCGAGCTCGAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCaaaa                                                                                                                     >  2:1100347/1‑150 (MQ=255)                                           aTGCCGTCAGCAAGCAACTGCGCCTGAGTTATTTCCATGGCGAGCTCGAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTCCAAAAGCCGCGACAGCg                                                                                                         <  2:321481/150‑1 (MQ=255)                                                  cAGCAAGCAACTGCGCCTGAGTTATTTCCATGGCGAGCTCGAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGc                                                                                                  <  2:555138/150‑1 (MQ=255)                                                  cAGCAAGCAACTGCGCCTGAGTTATTTCCATGGCGAGCTCGAGCATCTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGc                                                                                                  <  1:73102/150‑1 (MQ=255)                                                     caagcaaCTGCGCCTGAGTTATTTCCATGGCGAGCTCGAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGAACTGCGCTAGTTCAACTGCCCCGACAGCGGTACGGCTTa                                                                                               <  2:648474/150‑1 (MQ=255)                                                             tGCGCCTGAGTTATTTCCATGGCGAGCTCGAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTg                                                                                       <  2:507869/150‑1 (MQ=255)                                                                gcCTGAGTTATTTCCATGGCGAGCCGGAGCTTTTTTACGGCCAGGATTTCGCGGGGCGGGTCCACGACCGGCCGCTGGGGGCGGGCGTGCTGACCACCGCCCTGGGTTATTTCAAAAGCGGCGAAAGCGGTACGGCGTATGGCGTTGGCa                                                                                    >  2:785991/1‑150 (MQ=255)                                                                 ccTGAGTTATTTCCATGGCGAGCTCGAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCAt                                                                                   <  2:942619/150‑1 (MQ=255)                                                                    gAGTTATTTCCATGGCGAGCTCGAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGa                                                                                <  2:855825/150‑1 (MQ=255)                                                                              cATGGCGAGCTCGAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATg                                                                      >  1:310295/1‑150 (MQ=255)                                                                               aTGGCGAGCTCGAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTAt                                                                                              >  1:806862/1‑125 (MQ=255)                                                                               aTGGCGAGCTCGAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTAt                                                                                              <  2:806862/125‑1 (MQ=255)                                                                                tGGCGAGCTCGAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGtt                                                                    >  1:293074/1‑150 (MQ=255)                                                                                        tCGAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCcgc                                                                                                                <  2:92155/98‑1 (MQ=255)                                                                                        tCGAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCcgc                                                                                                                >  1:92155/1‑98 (MQ=255)                                                                                          gAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACt                                                                                                                           >  2:1156424/1‑85 (MQ=255)                                                                                          gAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACt                                                                                                                           <  1:1156424/85‑1 (MQ=255)                                                                                           aGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGTTCAGCGGCCAAc                                                         >  2:343928/1‑150 (MQ=255)                                                                                               tttCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGTTCAGCGGCCAACTGTc                                                     <  2:619980/150‑1 (MQ=255)                                                                                               tttCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGTTCAGCGGCCAACTGTc                                                     <  2:1108074/150‑1 (MQ=255)                                                                                                ttCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGTTCAGCGGCCAACTGTCg                                                    <  2:905254/150‑1 (MQ=255)                                                                                                   tACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGTTCAGCGGCCAACTGTCGTAc                                                 >  1:1181996/1‑150 (MQ=255)                                                                                                       gCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGTTCAGCGGCCAACTGTCGTACGccc                                             >  2:1109979/1‑150 (MQ=255)                                                                                                               ttCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGcgtgctgaccaccgacctgcgaagtcctggcggtagaaatgctcgagctcgccatggaaataactcaggcgcagttgcttgctgacggcatagtcagcaccggcgaagctga                                     <  2:52017‑M2/150‑113 (MQ=255)                                                                                                               ttCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGTTCAGCGGCCAACTGTCGTACGCCCATTCCggg                                     <  1:1100347/150‑1 (MQ=255)                                                                                                               ttCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGTTCAGCGGCCAACTGTCGTACGCCCATTCCggg                                     <  2:310295/150‑1 (MQ=255)                                                                                                               ttCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGTTCAGCGGCCAACTGTCGTACGCCCATTCCggg                                     >  2:783566/1‑150 (MQ=255)                                                                                                                  gCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGtt                                                                    <  1:846087/116‑1 (MQ=255)                                                                                                                  gCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGtt                                                                    >  2:846087/1‑116 (MQ=255)                                                                                                                    cGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGcgtgcaccagcccggcgaagtcctggcggtagaaatgctcgagctcgccatggaaataactcaggcgcagttgcttgctgacggcatagtcagcaccggcgaagctgaaatcgccag                                <  2:1022514‑M2/150‑118 (MQ=255)                                                                                                                    cGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGTTCAGCGGCCAACTGTCGTACGCCCATTCCGGGCATAc                                >  2:589415/1‑150 (MQ=255)                                                                                                                         tGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGTTCAGCGGCCAACTGTCGTACGCCCATTCCGGGCATACCGTCg                           >  1:927821/1‑150 (MQ=255)                                                                                                                          ggTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGTTCAGCGGCCAACTGTCg                                                    <  1:484240/124‑1 (MQ=255)                                                                                                                          ggTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGTTCAGCGGCCAACTGTCg                                                    >  2:484240/1‑124 (MQ=255)                                                                                                                            tGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGTTCAGCGGCCAACTGTCGTACGCCCATTCCGGGCATACCGTCGgcg                        >  1:592357/1‑150 (MQ=255)                                                                                                                             gCACGACCTGCCGCTGGGCGGCGGcgtgcaccagcccggcgaagtcctggcggtagaaatgctcgagctcgccatggaaataa                                                                                          >  2:1122692‑M2/1‑24 (MQ=255)                                                                                                                             gCACGACCTGCCGCTGGGCGGCGGcgtgcaccagcccggcgaagtcctggcggtagaaatgctcgagctcgccatggaaataa                                                                                          <  1:1122692‑M2/83‑60 (MQ=255)                                                                                                                               aCGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGTTCAGCGGCCAACTGTCGTACGCCCATTCCGGGCATACCGTCGGCGCAg                     <  1:343928/150‑1 (MQ=255)                                                                                                                                cGACCTGCCGCTGGGCGGCGGcgtgcaccagcccggcgaagtcctggcggtagaaatgctcgagctcgccatggaaataactcaggcgcagttgcttgctgacggcatagtcagcaccggcgaagctgaaatcgccagacgctgggccgc                    >  1:1022514‑M2/1‑21 (MQ=255)                                                                                                                                 gACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGCTCCCTTAACCGCCGCGACCGCGGTCCGGCGTATGGCGGTGGCATCGACAACGACATGTTCAGCGTCCAACTGTCGTACGCCCATTCCGGGCATACCGTCGGCGCAGGt                   >  2:168809/1‑150 (MQ=255)                                                                                                                                      gCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGTTCAGCGGCCAACTGTCGTACGCCCATTCCGGGCATACCGTCGGCGCAGGTTACCa              >  2:397940/1‑150 (MQ=255)                                                                                                                                         gCTGGGCGGCGGcgtgcaccagcccggcgaagtcctggcggtagaaatgctcgagctcgccatggaaataactcaggcgcagttgcttgctgacggcatagtcagcaccggcgaagctgaaatcgccagacgctgggccgccatacccgt           <  1:186693‑M2/150‑139 (MQ=255)                                                                                                                                             ggcggcggcGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGTTCAGCGGCCAACTGTCGTACGCCCATTCCGGGCATACCGTCGGCGCAGGTTACCAGGTGCTc       <  2:592357/150‑1 (MQ=255)                                                                                                                                              gcggcggcgTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGTTCAGCGGCCAACTGTCGTACGCCCATTCCGGGCATACCGTCGGCGCAGGTTACCAGGTGCTCg      <  1:629333/150‑1 (MQ=255)                                                                                                                                               cggcggcgTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGTTCAGCGGCCAACTGTCGTACGCCCATTCCGGGCATACCGTCGGCGCAGGTTACCAGGTGCTCGa     <  2:293074/150‑1 (MQ=255)                                                                                                                                                 gcggcgTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGTTCAGCGGCCAACTGTCGTACGCCCATTCCGGGCATACCGTCGGCGCAGGTTACCAGGTGCTCGATg   <  1:560900/150‑1 (MQ=255)                                                                                                                                                  cggcgTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGTTCAGCGGCCAACTGTCGTACGCCCATTCCGGGCATACCGTCGGCGCAGGTTACCAGGTGCTCGATgg  <  2:927821/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GCGGCCCAGCGTCTGGCGATTTCAGCTTCGCCGGTGCTGACTATGCCGTCAGCAAGCAACTGCGCCTGAGTTATTTCCATGGCGAGCTCGAGCATTTCTACCGCCAGGACTTCGCCGGGCTGGTGCACGACCTGCCGCTGGGCGGCGGCGTGCTGACCACCGACCTGCGTTACTTCAAAAGCCGCGACAGCGGTACGGCGTATGGCGGTGGCATCGACAACGACATGTTCAGCGGCCAACTGTCGTACGCCCATTCCGGGCATACCGTCGGCGCAGGTTACCAGGTGCTCGATGG  >  NC_002947/2342793‑2343087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.