New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2407988 =	43 (0.950)	4 (0.090)	4/240	NT	9.3%	coding (620/1566 nt)	PP_2111	aerotaxis receptor
	?	NC_002947	2408046 =	36 (0.820)					coding (562/1566 nt)	PP_2111	aerotaxis receptor

TCCTGGCTGAGCATGGCCATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGC‑CGATCAGGAAGCCCACCTGGCTGATCAGGATGAACGGGAGCCAGTCCTGCAGCACTGGCAGCCACTTGTCGCGACGCGGT  >  NC_002947/2407901‑2408188                                                                                                                                                  |                                                                                                                                                 tCCTGGCTGAGCATGGCCATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGAccc                                                                                                                                              >  1:101962/1‑150 (MQ=255)     ggCTGAGCATGGCCATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACGCAGTg                                                                                                                                          <  2:1145357/150‑1 (MQ=255)              tGGCCATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGATTGAGGACGCGCTGCTGCCAGCTCAGCCCAAGCAGACCCAGTGGTACCGaaa                                                                                                                                 <  2:377978/150‑1 (MQ=255)               ttcctgatcggcaactggctgggtcattcctggggctttgccttggccgcagggctttcggtaccactgggtcTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGa                                                                                                                                   <  2:840110‑M1/74‑1 (MQ=255)               ttcctgatcggcaactggctgggtcattcctggggctttgccttggccgcagggctttcggtaccactgggtcTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGa                                                                                                                                   >  1:840110‑M1/74‑147 (MQ=255)                   aTTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCt                                                                                                                            <  1:90586/150‑1 (MQ=255)                     ttCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGc                                                                                                                          <  1:854734/150‑1 (MQ=255)                        cAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGc                                                                                                                       >  2:962301/1‑150 (MQ=255)                             gcgcCTGCACGCTACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGGGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAgg                                                                                                                  >  2:127461/1‑150 (MQ=255)                             gcgcCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAgg                                                                                                                  <  2:1062609/150‑1 (MQ=255)                                    cACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGcc                                                                                                           >  1:55833/1‑150 (MQ=255)                                     aCGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGcc                                                                                                                      <  1:32328/138‑1 (MQ=255)                                     aCGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGcc                                                                                                                      >  2:32328/1‑138 (MQ=255)                                             gCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAAt                                                                                                   >  1:71842/1‑149 (MQ=255)                                             gCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAAt                                                                                                   <  2:71842/149‑1 (MQ=255)                                              cTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGa                                                                                                 <  2:1136205/150‑1 (MQ=255)                                               tGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGAc                                                                                                <  2:910809/150‑1 (MQ=255)                                                    gTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACccagc                                                                                           >  2:39099/1‑150 (MQ=255)                                                           tCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTa                                                                                                                                       >  1:1050278/1‑99 (MQ=255)                                                           tCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTa                                                                                                                                       <  2:1050278/99‑1 (MQ=255)                                                           tCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGc                                                                                   <  2:101962/150‑1 (MQ=255)                                                               cgcgATCAGTGGGTAGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGC‑CGAt                                                                              <  1:383105/150‑1 (MQ=255)                                                                gcgATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGC‑CGATc                                                                             <  1:262885/150‑1 (MQ=255)                                                                       gTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCg                                                                                                                         <  2:132897/101‑1 (MQ=255)                                                                       gTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCg                                                                                                                         >  1:132897/1‑101 (MQ=255)                                                                       gTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGC‑CGATCAGGAAGc                                                                      <  1:39099/150‑1 (MQ=255)                                                                        tcggtaccactgggtctgcttggcctgagctggcagcagcgcggcctcaagcgcctgctgcgcctggccgagcaGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGC‑CGATCAGGaa                                                                        >  1:840110‑M2/75‑147 (MQ=255)                                                                        tcggtaccactgggtctgcttggcctgagctggcagcagcgcggcctcaagcgcctgctgcgcctggccgagcaGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGC‑CGATCAGGaa                                                                        <  2:840110‑M2/73‑1 (MQ=255)                                                                           gTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGC‑CGATCAGGAAGCCCAc                                                                  >  2:283896/1‑150 (MQ=255)                                                                               gAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGC‑CGATCAGGAAGCCCACCTgg                                                              >  1:933112/1‑150 (MQ=255)                                                                                aaGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGC‑CGATCAGGAAGCCCACCTGGc                                                             >  1:1035911/1‑150 (MQ=255)                                                                                     gTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGC‑CGATCAGGAAGCCCACCTGGCTGATc                                                        >  2:77930/1‑150 (MQ=255)                                                                                     gTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGC‑CGATCAGGAAGCCCACCTGGCTGATc                                                        <  2:933112/150‑1 (MQ=255)                                                                                         GCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCGGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGC‑CGATCAGGAAGCCCACCTGGCTGATCAGGa                                                    <  1:1000695‑M1/150‑1 (MQ=255)                                                                                          cttggcctgagctggcagcagcgcggcctcaagcgcctgctgcgcctggccgagcaGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGC‑CGATCAGGATGCCCACCTGGCTGATc                                                        >  2:232592‑M2/57‑145 (MQ=255)                                                                                          cttggcctgagctggcagcagcgcggcctcaagcgcctgctgcgcctggccgagcaGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGC‑CGATCAGGAAGCCCACCTGGCTGATc                                                        <  1:232592‑M2/89‑1 (MQ=255)                                                                                           TCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGAcc                                                                                               >  1:1051878‑M1/1‑107 (MQ=255)                                                                                           TCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGAcc                                                                                               <  2:1051878‑M1/107‑1 (MQ=255)                                                                                           TCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGC‑CGATCAGGAAGCCCACCTGGCTGATCAGGATg                                                  <  2:1149288‑M1/150‑1 (MQ=255)                                                                                                cAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGC‑CGATCAGGAAGCCCACCTGGCTGATCAGGATGAACgg                                             <  2:55833/150‑1 (MQ=255)                                                                                                  ggagcagcaGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGC‑CGATCAGGAAGCCCACCTGGCTGATCAGGATGAACGGGa                                           <  1:127461/147‑1 (MQ=255)                                                                                                    cgcAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGC‑CGATCAGGAAGCCCACCTGGCTGATCAGGATGAACGGGAGc                                         <  1:77930/150‑1 (MQ=255)                                                                                                        gcagGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGC‑CGATCAGGAAGCCCACCTGGCTGATCAGGATGAACGGGAGCCAGt                                     >  1:324608/1‑150 (MQ=255)                                                                                                              gcTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGC‑CGATCAGGAAGCCCACCTGGCTGATCAGGATGAACGGGAGCCAGTCCTgca                               <  2:1035911/150‑1 (MQ=255)                                                                                                                  gAGGCCGCGCTGCTGCCAGATCAGGCCAAGCAGACCCAGTGTTACCGAAAGCCCTGCGGCCAAGGCAAAACCCGATGA‑‑CACCGACCGCAGCTCCTTGATCGGGGAGCCCATCTGGCTGATCAGGATGAACGGGAGCCAGTCCTGCAGCAc                           >  1:744620/1‑150 (MQ=255)                                                                                                                          gctgctGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGC‑CGATCAGGAAGCCCACCTGGCTGATCAGGATGAACGGGAGCCAGTCCTGCAGCACTGGCAGcc                   >  1:230981/1‑150 (MQ=255)                                                                                                                                        aGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGC‑CGATCAGGAAGCCCACCTGGCTGATCAGGATGAACGGGAGCCAGTCCTGCAGCACTGGCAGCCACTTGTCGCGAcgc     >  1:667169/1‑150 (MQ=255)                                                                                                                                           ccAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGC‑CGATCAGGAAGCCCACCTGGCTGATCAGGATGAACGGGCCGTAGGCCTGCAGCACTGGCAGCCACTTGTCGCGACGCGGt  >  1:11542/1‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                                 TCCTGGCTGAGCATGGCCATTTCCAGGCGCGCCTGCACGCCACGGCTGTCGGTGAACATCTGCGCGATCAGTGGGTCGGAAGTGGTTTGCTCGGCCAGGCGCAGCAGGCGCTTGAGGCCGCGCTGCTGCCAGCTCAGGCCAAGCAGACCCAGTGGTACCGAAAGCCCTGCGGCCAAGGCAAAGCCCCAGGAATGACCCAGC‑CAGTTGC‑CGATCAGGAAGCCCACCTGGCTGATCAGGATGAACGGGAGCCAGTCCTGCAGCACTGGCAGCCACTTGTCGCGACGCGGT  >  NC_002947/2407901‑2408188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.