New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2473723	43 (0.950)	3 (0.070)	3/238	NT	6.6%	coding (416/1851 nt)	PP_2167	PhoD‑like phosphatase
	?	NC_002947	= 2473768	44 (1.020)					coding (371/1851 nt)	PP_2167	PhoD‑like phosphatase

TCAGGCTATGGATGGCGCGCAGCATGGGGCCGGCGACATCGTCGGCGTAAACCTGGTCGCCCGTCATCACTAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTGGGTTGCCGGGGTAGAGCAGGTGTGGGGCCCAGTCGGCGATACCCTGGCCGTTGATCAGTAGGTCGTAGTCGAGCAGCTGG  >  NC_002947/2473619‑2473917                                                                                                                                                      |                                                                                                                                                      tCAGGCTATGGATGGCGCGCAGCATGGGGCCGGCGACATCGTCGGCGTAAACCTGGTCGCCCGTCATCACTAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGggt                                                                                                                                                       >  1:879903/1‑150 (MQ=255)         tggatggCGCGCAGCATGGGGCCGGCGACATCGTCGGCGTAAACCTGGTCGCCCGTCATCACTAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGc                                                                                                                                               <  2:823025/150‑1 (MQ=255)                  cgcAGCATGGGGCCGGCGACATCGTCGGCGTAAACCTGGTCGCCCGTCATCACTAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAg                                                                                                                                      <  1:913312/150‑1 (MQ=255)                      gcaTGGGGCCGGCGAAATCGTCGGCGTAAACCTGGTAGACCGTCATCACTAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAAc                                                                                                                                  <  1:171986/150‑1 (MQ=255)                       caTGGGGCCGGCGACATCGTCGGCGTAAACCTGGTCGCCCGTCATCACTAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAAcc                                                                                                                                 >  1:1164725/1‑150 (MQ=255)                        aTGGGGCCGGCGACATCGTCGGCGTAAACCTGGTCGCCCGTCATCACTAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCg                                                                                                                                >  2:719311/1‑150 (MQ=255)                            ggCCGGCGACATCGTCGGCGTAAACCTGGTCGCCCGTCATCACTAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTgca                                                                                                                            <  1:724981/150‑1 (MQ=255)                                   gACATCGTCGGCGTAAACCTGGTCGCCCGTCATCACTAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATg                                                                                                                     >  1:340882/1‑150 (MQ=255)                                      aTCGTCGGCGTAAACCTGGTCGCCCGTCATCACTAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTc                                                                                                                  >  2:1038350/1‑150 (MQ=255)                                         gtcgGCGTAAACCTGGTCGCCCGTCATCACTAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAg                                                                                                               >  2:1174473/1‑150 (MQ=255)                                               gTAAACCTGGTCGCCCGTCATCACTAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTc                                                                                                         >  2:74878/1‑150 (MQ=255)                                                     cTGGTCGCCCGTCATCACTAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGc                                                                                                                                        <  1:1115894/113‑1 (MQ=255)                                                     cTGGTCGCCCGTCATCACTAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGc                                                                                                                                        >  2:1115894/1‑113 (MQ=255)                                                           gCCCGTCATCACTAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAg                                                                                             >  1:821467/1‑150 (MQ=255)                                                             ccGTCATCACTAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGc                                                                                           >  1:852733/1‑150 (MQ=255)                                                                tcatcaCTAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCg                                                                                        <  2:852733/150‑1 (MQ=255)                                                                tcatcaCTAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCg                                                                                        >  1:770513/1‑150 (MQ=255)                                                                  atcaCTAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGgcgc                                                                                                           >  1:1164447/1‑129 (MQ=255)                                                                  atcaCTAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGgcgc                                                                                                           <  2:1164447/129‑1 (MQ=255)                                                                  atcaCTAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCggg                                                                                      <  2:821467/150‑1 (MQ=255)                                                                     aCTAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGt                                                                                   >  1:721352/1‑150 (MQ=255)                                                                      cTAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTg                                                                                  <  2:770513/150‑1 (MQ=255)                                                                       tAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCg                                                                                                                                          >  1:1023290/1‑93 (MQ=255)                                                                       tAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCg                                                                                                                                          <  2:1023290/93‑1 (MQ=255)                                                                                 gggcggTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTGGGTTGCCgggg                                                                       <  1:719311/150‑1 (MQ=255)                                                                                         ttCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTGGGTTGCCGGGGTAGAGCAg                                                               <  2:1164725/150‑1 (MQ=255)                                                                                         ttCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTGGGTTGCCGGGGTAGAGCAg                                                               >  2:202897/1‑150 (MQ=255)                                                                                              gCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTGGGTTGCCGGGGTAGAGCAGGtgtg                                                          >  2:772327/1‑150 (MQ=255)                                                                                                ttcttGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTGGGTTGCCGGGGTAGAGCAGGTGTggg                                                        <  1:1174473/150‑1 (MQ=255)                                                                                                   ttGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGTCACATCCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTGGGTTGCCGGGGTAGAGCAGGTGTGGGGcc                                                     <  1:74878/150‑1 (MQ=255)                                                                                                       aCCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTggtgcaagaagcccgaagaccgccccgccgtgctagtgatgacgggcgaccaggtttacgccgacgatgtcgccggccccatgctgcgcgccatccatagcc                                                 <  1:800627‑M2/150‑103 (MQ=255)                                                                                                       aCCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTGGGTTGCCGGGGTAGAGCAGGTGTGGGGCCCAGt                                                 >  2:752487/1‑150 (MQ=255)                                                                                                        ccccTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTgg                                                                                 >  1:410121/1‑117 (MQ=255)                                                                                                        ccccTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTgg                                                                                 <  2:410121/117‑1 (MQ=255)                                                                                                          ccTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTgg                                                                                 <  2:423857/115‑1 (MQ=255)                                                                                                          ccTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTgg                                                                                 >  1:423857/1‑115 (MQ=255)                                                                                                                    ccGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTGGGTTGCCGGGGTAGAGCAGGTGTGGGGCCCAGTCGGCGATACCCTg                                    <  1:202897/150‑1 (MQ=255)                                                                                                                     cGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTGGGTTGCCGGGGTAGAGCAGGTGTGGGGCCCAGTCGGCGATACCCTgg                                   >  1:216989/1‑150 (MQ=255)                                                                                                                      ggTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTGGGTTGCCGGGGTAGAGCAGGTGTGGGGCCCAGTCGGCGATACCCTGGc                                  <  1:1029849/150‑1 (MQ=255)                                                                                                                      ggTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTGGGTTGCCGGGGTAGAGCAGGTGTGGGGCCCAGTCGGCGATACCCTGGc                                  <  2:721352/150‑1 (MQ=255)                                                                                                                        tCGGCGCACAGCAGGCCGTCGGCAGCAGGGTggtgcaagaagcccgaagaccgccccgccgtgctagtgatgacgggcgaccag                                                                                                  >  2:1056071‑M2/1‑31 (MQ=255)                                                                                                                        tCGGCGCACAGCAGGCCGTCGGCAGCAGGGTggtgcaagaagcccgaagaccgccccgccgtgctagtgatgacgggcgaccag                                                                                                  <  1:1056071‑M2/84‑54 (MQ=255)                                                                                                                              cacaGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTGGGTTGCCGGGGTAGAGCAGGTGTGGGGCCCAGTCGGCGATACCCTGGCCGTTGATc                          >  2:187266/1‑150 (MQ=255)                                                                                                                                 agcagGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTGGGTTGCCGGGGTAGAGCAGGTGTGGGGCCCAGTCGGCGATACCCTGGCCGTTGATCAGt                       >  2:960351/1‑150 (MQ=255)                                                                                                                                       ccGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTGGGTTGCCGGGGTAGAGCAGGTGTGGGGCCCAGTCGGCGATACCCTGGCCGTTGATCAGTAGGTCg                 <  2:879903/150‑1 (MQ=255)                                                                                                                                         gTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTGGGTTGCCGGGGTAGAGCAGGTGTGGGGCCCAGTCGGCGATACCCTGGCCGTTGATCAGTAGGTCGTa               >  2:477762/1‑150 (MQ=255)                                                                                                                                            ggCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTGGGTTGCCGGGGTAGAGCAGGGGTGGGGCCCAGTCGGCGATACCCTGGCCGTTGATCAGTAGGTCGTAGTc            >  1:1167117/1‑150 (MQ=255)                                                                                                                                               agcagGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTGGGTTGCCGGGGTAGAGCAGGTGTGGGGCCCAGTCGGCGATACCCTGGCCGTTGATCAGTAGGTCGTAGTCGag         >  2:415290/1‑150 (MQ=255)                                                                                                                                                gcagGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTGGGTTGCCGGGGTAGAGCAGGTGTGGGGCCCAGTCGGCGATACCCTGGCCGTTGATCAGTAGGTCGTAGTCGagc        >  2:777997/1‑150 (MQ=255)                                                                                                                                                    ggtggtGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTGGGTTGCCGGGGTAGAGCAGgtgt                                                           >  1:935531/1‑95 (MQ=255)                                                                                                                                                    ggtggtGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTGGGTTGCCGGGGTAGAGCAGgtgt                                                           <  2:935531/95‑1 (MQ=255)                                                                                                                                                      tggtgCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTGGGTTGCCGGGGTAGAGCAGGTGTGGGGCCCAGTCGGCGATACCCTGGCCGTTGATCAGTAGGTCGTAGTCGAGCAGCTgg  <  2:588777/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                      TCAGGCTATGGATGGCGCGCAGCATGGGGCCGGCGACATCGTCGGCGTAAACCTGGTCGCCCGTCATCACTAGCACGGCGGGGCGGTCTTCGGGCTTCTTGCACCCCTGCAGCAGCCGGTCGGCGCACAGCAGGCCGTCGGCAGCAGGGTGGTGCGGCTTGCGGCAGGAACCGTGCAGCAAATGGTCGAGGCGCTCACGCAGCACCAGGCTCGGGCGTGGGTTGCCGGGGTAGAGCAGGTGTGGGGCCCAGTCGGCGATACCCTGGCCGTTGATCAGTAGGTCGTAGTCGAGCAGCTGG  >  NC_002947/2473619‑2473917

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.