New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2855879 =	37 (0.820)	3 (0.070)	3/240	NT	6.7%	noncoding (79/87 nt)	PP_mr36	C4 ncRNA
	?	NC_002947	2855956 =	48 (1.100)					noncoding (2/87 nt)	PP_mr36	C4 ncRNA

GCGTAACTCCAACGTCGGAAAGTGGAGCTACCTCAACCTTGCTGTCAAACAAGATGGTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAGGGCTGACTATTTCCATGTGCAACGAAAATCAGGCGCGAGGAGTATCTTTGGGAAATGGCCTACAAG  >  NC_002947/2855822‑2856099                                                                                                                                       |                                                                                                                                                gCGTACCTCCAACGTCGGAAAGTGGAGCTACCTCAACCTTGCTGTCAAACAAGATGGTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGa                                                                                                                                         <  1:349517/143‑1 (MQ=255) gCGTAACTCCAACGTCGGAAAGTGGCGCTACCTCAACCTTGCTGTCAAACAAGATGGTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGa                                                                                                                                         >  2:349517/1‑143 (MQ=255)  cGTAACCCAAACCTCGGAAAGTGGAGCTACCTCAACCTTGCTGTCACGCATGGGTTTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGa                                                                                                                                 <  1:676986/150‑1 (MQ=255)   gTAACTCCAACGTCGGAAAGTGGAGCTACCTCAACCTTGCTGTCAAACAAGATGGTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAg                                                                                                                                >  1:1041321/1‑150 (MQ=255)        tCCAACGTCGGAAAGTGGAGCTACCTCAACCTTGCTGTCAAACAAGATGGTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACaa                                                                                                                           >  1:255104/1‑150 (MQ=255)          cAACGTCGGAAAGTGGAGCTACCTCAACCTTGCTGTCAAACAAGATGGTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGa                                                                                                                              <  2:722/145‑1 (MQ=255)          cAACGTCGGAAAGTGGAGCTACCTCAACCTTGCTGTCAAACAAGATGGTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGACGCCAGGAAAGCGAGCACATGAGGa                                                                                                                              >  1:722/1‑145 (MQ=255)           accggttttgacagaccgctgacgttgtcctcatgtgctcgctttcaTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGc                                                                                                                                           >  2:992484‑M1/48‑131 (MQ=255)           accggttttgacagaccgctgacgttgtcctcatgtgctcgctttcaTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGc                                                                                                                                           <  1:992484‑M1/84‑1 (MQ=255)              gTCGGAAAGTGGAGCTACCTCAACCTTGCTGTCAAACAAGATGGTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAg                                                                                                                     <  1:38809/150‑1 (MQ=255)                 ggAAAGTGGAGCTACCTCAACCTTGCTGTCAAACAAGATGGTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCgg                                                                                                                  <  2:1025449/150‑1 (MQ=255)                                cTCAACCTTGCTGTCAAACAAGATGGTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGaaa                                                                                                                                             <  1:953027/108‑1 (MQ=255)                                cTCAACCTTGCTGTCAAACAAGATGGTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGaaa                                                                                                                                             >  2:953027/1‑108 (MQ=255)                                    aCCTTGCTGTCAAACAAGATGATGAAAACTGGACGCAAGCTGATAGAGCGAGAGGTGGGCACCCTGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCt                                                                                               >  2:740834/1‑150 (MQ=255)                                             tCAAACAAGATGGTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTgg                                                                                        <  2:713618/148‑1 (MQ=255)                                             tCAAACAAGATGGTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTgg                                                                                        >  1:713618/1‑148 (MQ=255)                                             tCAAACAAGATGGTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCa                                                                                      <  1:608683/150‑1 (MQ=255)                                               aaaCAAGATGGTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGc                                                                                    >  1:868899/1‑150 (MQ=255)                                                aaCAAGATGGTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAGCACCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCg                                                                                   >  1:968361/1‑150 (MQ=255)                                                aaCAAGATGGTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCg                                                                                   >  2:1112153/1‑150 (MQ=255)                                                  cAAGATGGTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGc                                                                                                                    <  2:1139730/115‑1 (MQ=255)                                                  cAAGATGGTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGc                                                                                                                    >  1:1139730/1‑115 (MQ=255)                                                   gctttcatggcggctgtacgtgtgggcaccctgtggtgcgccgagtgccaacgtctcggtctgtcaacccgcgtacagctgccaTGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGt                                                                                                   <  1:992484‑M2/47‑1 (MQ=255)                                                   gctttcatggcggctgtacgtgtgggcaccctgtggtgcgccgagtgccaacgtctcggtctgtcaacccgcgtacagctgccaTGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGt                                                                                                   >  2:992484‑M2/85‑131 (MQ=255)                                                    aGATGGTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCaaaa                                                                                                        >  1:358879/1‑125 (MQ=255)                                                    aGATGGTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCaaaa                                                                                                        <  2:358879/125‑1 (MQ=255)                                                          tggcggctgtacgtgtgggcaccctgtggtgcgccgagtgccaacgtctcggtctgtcaacccgcgtacagctgccaTGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCgag                                                                         >  1:914884‑M2/78‑150 (MQ=255)                                                          TGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCgag                                                                         <  1:827533‑M1/150‑1 (MQ=255)                                                           GGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCg                                                                                                     <  1:850768‑M1/121‑1 (MQ=255)                                                           GGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCg                                                                                                     >  2:850768‑M1/1‑121 (MQ=255)                                                              aGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTa                                                                     >  1:1180516/1‑150 (MQ=255)                                                                cTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAgg                                                                   >  2:798505/1‑150 (MQ=255)                                                                   tACGCGGGTTGACAGAACGAGACGTTGGCCCTAGGCGCCCCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAGGGCt                                                                <  2:968361/150‑1 (MQ=255)                                                                     cgcgGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACGTGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAGGGCTGa                                                              <  1:26210/150‑1 (MQ=255)                                                                     cgcgGGTTGACAGACCGACACGTTGCCGCTCTGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAGGGCTGa                                                              <  1:306181/150‑1 (MQ=255)                                                                             cgatctccGAGACGTTGTCACTCGGCGGAGCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCTGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAGGGCTGACTATTTcc                                                      <  2:98736/144‑1 (MQ=255)                                                                              aCAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAGGGCTGACTATTTCCa                                                     <  2:309505/150‑1 (MQ=255)                                                                                  aCCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAGGGCTGACTATTTCCAtgtg                                                 >  1:1127089/1‑150 (MQ=255)                                                                                    cGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGca                                                                                                                                      >  1:460219/1‑63 (MQ=255)                                                                                    cGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGca                                                                                                                                      <  2:460219/63‑1 (MQ=255)                                                                                    cGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAGGGCTGACTATTTCCaagatcg                                               >  1:98736/1‑144 (MQ=255)                                                                                    cGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTAAAATGGACATGAAAGCGATCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGACGAGACTAGGGCTGACTATTTCCATGTGCa                                               >  1:22774/1‑150 (MQ=38)                                                                                         cGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAGGGCTGACTATTTCCATGTGCAACGaa                                          <  1:1062082/150‑1 (MQ=255)                                                                                                 gtgtgcgcACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAGGGCTGACTATTTCCATGTGCaa                                              >  1:624567/5‑138 (MQ=255)                                                                                                 gtgtgcgcACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAGGGCTGACTATTTCCATGTGCaa                                              <  2:624567/134‑1 (MQ=255)                                                                                                 cTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCAAAAACCTCAGGAAACCGTAAGCGTTCTGTCTAAGCCGTTCTCTGAATTGGCAGCGACAGGCCGAGACTAGGGCTGACTATTTCCATGTGCAACGAAAATCAGgc                                  <  2:1041321/150‑1 (MQ=25)                                                                                                  tCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAGGGCTGACTATTTCCAt                                                    >  2:624555/1‑131 (MQ=255)                                                                                                  tCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAGGGCTGACTATTTCCAt                                                    <  1:624555/131‑1 (MQ=255)                                                                                                     gcgcACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAGGGCTGACTATTTCCATGTGCAACGAAAATCAGGCGCga                              <  2:827533/150‑1 (MQ=255)                                                                                                     ccgcACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAGGGCTGACTATTTCCATGTGCAACGAAAATCAGGCGCga                              <  1:740834/149‑1 (MQ=255)                                                                                                        caccacAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGACTTGGCAGCGACAGGCCGAGACTAGGGCTGACTATTTCCATGTGCAACGAAAATCAGGCGCgagga                           <  2:868899/150‑1 (MQ=255)                                                                                                            acaGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAGGGCTGACTATTTCCATGTGCAACGAAAATCAGGCGCGAGGAGTAt                       >  1:309181/1‑150 (MQ=255)                                                                                                                ggTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAGGGCTGACTATTTCCATGTGCAACGAAAATCAGGCGCGAGGAGTATCttt                   <  2:255104/150‑1 (MQ=255)                                                                                                                ggTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAGGGCTGACTATTTCCATGTGCAACGAAAATCAGGCGCGAGGAGTATCttt                   <  1:798505/150‑1 (MQ=255)                                                                                                                 gTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAGGGCTGACTATTTCCATGTGCAACGAAAATCAGGCGCGAGGAGTATCTTTg                  <  1:810404/150‑1 (MQ=255)                                                                                                                  tGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAGGGCTGACTATTTCCATGTGCAACGAAAATCAGGCGCGAGGAGTATCTTTgg                 <  1:1112153/150‑1 (MQ=255)                                                                                                                          ggTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGGATTGGCAGCGACAGGCCGAGACTAGGGCTGACTATTTCCATGTGCAACGAAAATCAGGCGCGAGGAGTATCTTTGGGAAATGGc         <  1:18380/149‑1 (MQ=255)                                                                                                                           gTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGACGAGACTAGGGCTGACTATTTCCATGTGCAACGAAAATCAGGCGCGAGGAGTATCTTTGGGAAATGGcc        <  2:22774/150‑1 (MQ=255)                                                                                                                                 ccgccATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAGGGCTGACTATTTCCATGTGCAACGAAAATCAGGCGCGAGGAGTATCTTTGGGAAATGGCCTACaag  >  1:528855/1‑150 (MQ=255)                                                                                                                                   gccaTGTAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAGGGCTGACTATTTCCATGTGCAACGAAAATCa                                     <  1:1166432‑M2/109‑1 (MQ=255)                                                                                                                                   gccaTGTAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAGGGCTGACTATTTCCATGTGCAACGAAAATCa                                     >  2:1166432‑M2/5‑113 (MQ=255)                                                                                                                                       |                                                                                                                                                GCGTAACTCCAACGTCGGAAAGTGGAGCTACCTCAACCTTGCTGTCAAACAAGATGGTGGCAGCTGTACGCGGGTTGACAGACCGAGACGTTGGCACTCGGCGCACCACAGGGTGCCCACACGTACAGCCGCCATGAAAGCGAGCACATGAGGACAACGTCAGCGGTCTGTCAAAACCGGTCGCTGAATTGGCAGCGACAGGCCGAGACTAGGGCTGACTATTTCCATGTGCAACGAAAATCAGGCGCGAGGAGTATCTTTGGGAAATGGCCTACAAG  >  NC_002947/2855822‑2856099

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.