New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2981197	36 (0.800)	5 (0.120)	5/228	NT	11.9%	coding (1211/1734 nt)	PP_2607	hypothetical protein
	?	NC_002947	= 2981208	41 (0.990)					coding (1200/1734 nt)	PP_2607	hypothetical protein

CCGGCATCGCTGTTGAACTGTGAAAGTGTTTGCGCAAACACCTGTGGATCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACTCGTTGACGAAGCGCCGCCCGGTTTGGTCTACCGCAATCACG  >  NC_002947/2981059‑2981352                                                                                                                                                        |                                                                                                                                                 ccGGCATCGCTGTTGAACTGTGAAAGTGTTTGCGCAAACACCTGTGGATCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAgg                                                                                                                                                  >  2:270042/1‑150 (MQ=255)       gcttttttgaactgTGAAAGTGTTTGCGCTCACACCTGTGGATCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGccaagc                                                                                                                                            >  2:499214‑M2/7‑144 (MQ=255)         gtggttgAACTGTGAAAGTGTTTGCGCAAACACCTGTGGATCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGccaagccc                                                                                                                                          >  2:790178‑M2/4‑142 (MQ=255)             ttGAACTGTGAAAGTGTTTGCGCAAACACCTGTGGATCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAg                                                                                                                                      <  1:696251/150‑1 (MQ=255)                       aaaGTGTTTGCGCAAACACCTGTGGATCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTg                                                                                                                            >  2:785164/1‑150 (MQ=255)                           tgtTTGCGCAAACACCTGTGGATCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTc                                                                                                                        <  2:243547/150‑1 (MQ=255)                           tgtTTGCGCAAACACCTGTGGATCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGCAACGTCCGTCGATCAATGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTc                                                                                                                        <  1:571392/150‑1 (MQ=255)                             tttGCGCAAACACCTGTGGATCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTACAttaactaaa                                                                                                                      >  2:434001/1‑143 (MQ=255)                                   cAAACACCTGTGGATCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGc                                                                                                                >  2:1170796/1‑150 (MQ=255)                                           tgtgGATCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGAGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGAccagc                                                                                                        >  2:387507/1‑150 (MQ=255)                                                 tCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCcagcag                                                                                                  >  1:796964/1‑150 (MQ=255)                                                    aCGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCa                                                                                                               >  2:479136/1‑134 (MQ=255)                                                    aCGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCa                                                                                                               <  1:479136/134‑1 (MQ=255)                                                    aCGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTg                                                                                               >  2:424330/1‑150 (MQ=255)                                                        cGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCaa                                                                                           >  2:602821/1‑150 (MQ=255)                                                               cagggccagTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCttt                                                                                    <  1:424330/150‑1 (MQ=255)                                                                agggccagTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTTGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTg                                                                                   <  1:150589/150‑1 (MQ=255)                                                                 gggccagTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTgg                                                                                  >  1:129443/1‑150 (MQ=255)                                                                  ggccagTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGc                                                                                 >  1:698052/1‑150 (MQ=255)                                                                   gccagTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGCCTGG‑CGCG‑GCccaagcccgtcaacaaccag                                                                                                                              <  2:1140844‑M2/104‑21 (MQ=255)                                                                   gccagTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGCC‑TGGCGCG‑GCccaagcccgtcaacaaccag                                                                                                                              >  1:1140844‑M2/1‑84 (MQ=255)                                                                           cTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATtga                                                                        >  1:244029/1‑149 (MQ=255)                                                                               gATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTTGGC‑CG‑CGCCAGGccaagccc                                                                                                                                          <  2:796184‑M2/80‑9 (MQ=255)                                                                               gATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTTGGC‑CG‑CGCCAGGccaagccc                                                                                                                                          >  1:796184‑M2/1‑72 (MQ=255)                                                                                      tggCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGAGCACGAAgt                                                             <  2:129443/150‑1 (MQ=255)                                                                                          ccGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAgtggtg                                                         <  1:785164/150‑1 (MQ=255)                                                                                                    tAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCg                                               <  1:611147/150‑1 (MQ=255)                                                                                                    tAGCCTGCGTCCATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCg                                               <  1:267821/150‑1 (MQ=255)                                                                                                       ccTGCGCCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGAc                                            <  1:959071/150‑1 (MQ=255)                                                                                                        cTGCGTCGATCAGCGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCGAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCCGCTTGCAATGCATTTGGCGAACAGTGTGGACACGAAGTGGAGGCAGGAGTCggtcc                                           >  2:150927/1‑147 (MQ=255)                                                                                                        cTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACt                                           >  1:720316/1‑150 (MQ=255)                                                                                                            gTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCcagcag                                                                                                  >  1:296061/1‑91 (MQ=255)                                                                                                            gTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCcagcag                                                                                                  <  2:296061/91‑1 (MQ=255)                                                                                                                  cAACGCCTGGTTGTTGACGGGCTTGGGA‑CG‑CGCCAGGCCAAGGCCGTAGCAGTTTATTGCCTCGGCATCGCAGACCGGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACTCGTTGACGaa                                 <  1:270042/150‑1 (MQ=255)                                                                                                                   aaCGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACTCGTTGACGAAg                                <  1:434001/150‑1 (MQ=255)                                                                                                                        cTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACTCGTTGACGAAGcgccg                           >  1:705772/1‑150 (MQ=255)                                                                                                                         tGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGt                                                 <  1:527361/127‑1 (MQ=255)                                                                                                                         tGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGt                                                 >  2:527361/1‑127 (MQ=255)                                                                                                                            ttgttgACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACTCGTTGACGAAGCGCCGCCCg                       <  2:729159/150‑1 (MQ=255)                                                                                                                                 gACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACTCGTTGACGAAGCGCCGCCCGGTTTg                  <  1:602821/150‑1 (MQ=255)                                                                                                                                 gACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACTCGTTGACGAAGCGCCGCCCGGTTTg                  >  1:1028448/1‑150 (MQ=255)                                                                                                                                 gACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGCTAGGAGTCGGACTCGTTGACGAAGCGCCGCCCGGTTTg                  <  2:698052/150‑1 (MQ=255)                                                                                                                                    gggCTTGGGC‑CG‑CGCCAGGccaagcccgtcaacaaccaggcgttgatcgacgcaggctacctgtaccgggccaccacatcgcaggcactggccctggccatcgggatcgatccacaggtggttgcgcaaacactttcaaaattcacacgc               <  2:197659‑M2/150‑132 (MQ=255)                                                                                                                                      gCTTGGGC‑CG‑CGCCAGGccaagcccgtcaacaaccaggcgttg                                                                                                                        <  1:570932‑M2/43‑27 (MQ=255)                                                                                                                                      gCTTGGGC‑CG‑CGCCAGGccaagcccgtcaacaaccaggcgttg                                                                                                                        >  2:570932‑M2/1‑17 (MQ=255)                                                                                                                                          gggC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCg                                               >  2:173915/1‑112 (MQ=255)                                                                                                                                          gggC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCg                                               <  1:173915/112‑1 (MQ=255)                                                                                                                                          gggC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACTCGTTGACGAAGCGCCGCCCGTTTTGGTCTACCGc         >  1:249021/1‑150 (MQ=255)                                                                                                                                            gC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACTCGTTGACGAAGCGCCGCCCGGTTTGGTCTAcc           >  2:236907/1‑146 (MQ=255)                                                                                                                                            gC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACTCGTTGACGAAGCGCCGCCCGGTTTGGTCTAcc           <  1:236907/146‑1 (MQ=255)                                                                                                                                                   gcCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACTCGTTGACGAAGCGCCGCCCGGTTTGGTCTACCGCAATCACg  >  2:155820/1‑150 (MQ=255)                                                                                                                                                   gcCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGAAGACAAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGACAGACTCGTTAACGAAGAGCAGCCCGGTTTGGTCTACCGCAATCACg  >  2:86752/1‑150 (MQ=255)                                                                                                                                                        |                                                                                                                                                 CCGGCATCGCTGTTGAACTGTGAAAGTGTTTGCGCAAACACCTGTGGATCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGC‑CG‑CGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACTCGTTGACGAAGCGCCGCCCGGTTTGGTCTACCGCAATCACG  >  NC_002947/2981059‑2981352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.