New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3254059 =49 (1.090)3 (0.070) 3/240 NT 5.9% coding (1722/2202 nt) PP_2852 sulfatase domain‑containing protein
?NC_002947 3254088 = 48 (1.100)coding (1693/2202 nt) PP_2852 sulfatase domain‑containing protein

TCGTCAATGCGCTTGCGCAACTTGATCGGCGAAGGGCCGCCGAACTGGTAGCGCAGGTTGAGCGGGGTTTGCAGCAAGGATTGGTCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGTGAACAGGCCCTGGCCGTTGTGGTAGCGCAGCATGCCGTTGGTGTAGGAGATCATCTCGCGGCCGCTGTCGTAGTC  >  NC_002947/3253946‑3254235
                                                                                                                                              |                                                                                                                                                   
caacggcatgctgcgctaccacaacggccagggcctgttcaccgaatgtgacttccaacagcgctgccggcgttatgccagtgagggcttcatcgccgaccaggcccgctaccTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCgg                                                                                                                                              >  1:845290‑M1/114‑150 (MQ=255)
     aaTGCGCTTGCGCAACTTGATCGGCGAAGGGCCGCCGAACTGGTAGCGCAGGTTGAGCGGGGTTTGCAGCAAGGATTGGTCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTg                                                                                                                                         <  1:720129/150‑1 (MQ=255)
                 cAACTTGATCGGCGAAGGGCCGCCGAACTGGTAGCGCAGGTTGAGCGGGGTTTGCAGCAAGGATTGGTCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGaa                                                                                                                             <  2:662107/150‑1 (MQ=255)
                    cTTGATCGGCGAAGGGCCGCCGAACTGGTAGCGCAGGTTGAGCGGGGTTTGCAGCAAGGATTGGTCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGcc                                                                                                                          >  2:835335/1‑150 (MQ=255)
                     ttGATCGGCGAAGGGCCGCCGAACTGGTAGCGCAGGTTGAGCGGGGTTTGCAGCAAGGATTGGTCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGAt                                                                                                                                >  1:594575/1‑143 (MQ=255)
                     ttGATCGGCGAAGGGCCGCCGAACTGGTAGCGCAGGTTGAGCGGGGTTTGCAGCAAGGATTGGTCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGAt                                                                                                                                <  2:594575/143‑1 (MQ=255)
                         tCGGCGAAGGGCCGCCGAACTGGTAGCGCAGGTTGAGCGGGGTTTGCAGCAAGGATTGGTCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCAc                                                                                                                     >  1:658616/1‑150 (MQ=255)
                         tCGGCGAAGGGCCGCCGAACTGGTAGCGCAGGTTGAGCGGGGTTTGCAGCAAGGATTGGTCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCAc                                                                                                                     >  1:830584/1‑150 (MQ=255)
                              gAAGGGCCGCCGAACTGGTAGCGCAGGTTGAGCGGGGTTTGCAGCAAGGATTGGTCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGc                                                                                                                           >  2:1004001/1‑139 (MQ=255)
                              gAAGGGCCGCCGAACTGGTAGCGCAGGTTGAGCGGGGTTTGCAGCAAGGATTGGTCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGc                                                                                                                           <  1:1004001/139‑1 (MQ=255)
                               aaGGGCCGCCGAACTGGTAGCGCAGGTTGAGCGGGGTTTGCAGCAAGGATTGGTCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCAt                                                                                                               <  1:165307/150‑1 (MQ=255)
                                aGGGCCGCCGAACTGGTAGCGCAGGTTGAGCGGGGTTTGCAGCAAGGATTGGTCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATa                                                                                                              <  1:968998/150‑1 (MQ=255)
                                     cgccgAACTGGTAGCGCAGGTTGAGCGGGGTTTGCAGCAAGGATTGGTCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGcc                                                                                                         <  2:761891/150‑1 (MQ=255)
                                      gccgAACTGGTAGCGCAGGTTGAGCGGGGTTTGCAGCAAGGATTGGTCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCg                                                                                                        >  2:981660/1‑150 (MQ=255)
                                            cTGGTAGCGCAGGTTGAGCGGGGTTTGCAGCAAGGATTGGTCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAgcg                                                                                                  <  1:917989/150‑1 (MQ=255)
                                                     cAGGTTGAGCGGGGTTTGCAGCAAGGATTGGTCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGaa                                                                                         <  2:606538/150‑1 (MQ=255)
                                                              cGGGGTTTGCAGCAAGGATTGGTCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTc                                                                                >  1:912996/1‑150 (MQ=255)
                                                               ggggTTTGCAGCAAGGATTGGTCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCg                                                                               >  2:1110987/1‑150 (MQ=255)
                                                               ggggTTTGCAGCAAGGATTGGTCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCg                                                                               >  1:188109/1‑150 (MQ=255)
                                                                gggTTTGCAGCAAGGATTGGTCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCgg                                                                              >  2:174933/1‑150 (MQ=255)
                                                                gggTTTGCAGCAAGGATTGGTCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCgg                                                                              <  1:981660/150‑1 (MQ=255)
                                                                 ggTTTGCAGCAAGGATTGGTCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGt                                                                             <  2:569037/150‑1 (MQ=255)
                                                                        agcaAGGATTGGTCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGTGAACAgg                                                                      >  2:424583/1‑150 (MQ=255)
                                                                            gccagtgagggcttcatcgccgaccaggcccgctaccTTGGCCCAGCAGGCTGTCGGCCGGCCCAAgg                                                                                                                                                    <  1:1191756‑M1/31‑1 (MQ=255)
                                                                            gccagtgagggcttcatcgccgaccaggcccgctaccTTGGCCCAGCAGGCTGTCGGCCGGCCCAAgg                                                                                                                                                    >  2:1191756‑M1/38‑68 (MQ=255)
                                                                                    tCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGTGAACAGGCCCTGGCCGTtg                                                          >  2:246640/1‑150 (MQ=255)
                                                                                    tCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGTGAACAGGCCCTGGCCGTtg                                                          >  1:133545/1‑150 (MQ=255)
                                                                                      gAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGTGAACAGGCCCTGGCCGTtgtg                                                        >  2:895693/1‑150 (MQ=255)
                                                                                      gAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGTGAACAGGCCCTGGCCGTtgtg                                                        <  2:133545/150‑1 (MQ=255)
                                                                                       aGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGTGAACAGGCCCTGGCCGTTGTgg                                                       <  1:1110987/150‑1 (MQ=255)
                                                                                           ccACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCa                                                                                                                <  1:847786/89‑1 (MQ=255)
                                                                                           ccACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCa                                                                                                                >  2:847786/1‑89 (MQ=255)
                                                                                            cACGGCCACAGCAACGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGTGAACAGGCCCTGGCCGTTGTGGTAgcg                                                  >  2:653398/1‑150 (MQ=255)
                                                                                            cACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCt                                                                                                                        <  1:456043/80‑1 (MQ=255)
                                                                                            cACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCt                                                                                                                        >  2:456043/1‑80 (MQ=255)
                                                                                                gCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGTGAACAGGCCCTGGCCGTTGTGGTAGCgcagg                                              <  2:830584/150‑2 (MQ=255)
                                                                                                   aaGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGt                                                                             <  1:1186182/116‑1 (MQ=255)
                                                                                                   aaGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGt                                                                             >  2:1186182/1‑116 (MQ=255)
                                                                                                      gCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGTGAACAGGCCCTGGCCGTTGTGGTAGCGCAGCATGCCg                                        >  1:854468/1‑150 (MQ=255)
                                                                                                         ccgctaccttgggccggccgacagcctgctgggccaaGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGTGAACAGGCCCTGGCCGTTGTGGTAGCGCAGCATGCCGTTg                                     >  1:845290‑M2/38‑150 (MQ=255)
                                                                                                          cGATCTGTTGGCCCAGCAGGCTGTGGGCAGGCCCAAGNTGGAGGACGNGGTCATCGATGAAGGCCTCACGGGCATAGCGCCGGCAGCGCTGTTGGAAGTCACAGTCGGTGAACAGGCCCTGGCCGTTGTGGTAGCGCAACATGGCGTTgg                                    >  1:329566/1‑150 (MQ=255)
                                                                                                          cGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGTGAACAGGCCCTGGCCGTTGTGGTAGCGCAGCATGCCGTTgg                                    <  1:424583/150‑1 (MQ=255)
                                                                                                            aTCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCg                                                                               <  1:1180144/105‑1 (MQ=255)
                                                                                                            aTCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCg                                                                               >  2:1180144/1‑105 (MQ=255)
                                                                                                               ccttgggccggccgacagcctgctgggccaaGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGc                                                                                                                 >  2:1191756‑M2/32‑68 (MQ=255)
                                                                                                               ccttgggccggccgacagcctgctgggccaaGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGc                                                                                                                 <  1:1191756‑M2/37‑1 (MQ=255)
                                                                                                                 TTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTg                                                                                            >  1:1118621‑M1/1‑87 (MQ=255)
                                                                                                                 TTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTg                                                                                            <  2:1118621‑M1/87‑1 (MQ=255)
                                                                                                                 TTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGTGAACAGGCCCTGGCCGTTGTGGTAGCGCAGCATGCCGTTGGTGTAGga                             >  1:835335‑M1/1‑150 (MQ=255)
                                                                                                                      ccAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGTGAACAGGCCCTGGCCGTTGTGGTAGCGCAGCATGCCGTTGGTGTAGGAGatca                        >  1:255069/1‑150 (MQ=255)
                                                                                                                        agcagGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGTGAACAGGCCCTGGCCGTTGTGGTAGCGCAGCATGCCGTTGGTGTAGGAGatcatc                      <  1:246640/150‑1 (MQ=255)
                                                                                                                        agcagGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGTGAACAGGCCCTGGCCGTTGTGGTAGCGCAGCATGCCGTTGGTGTAGGAGatcatc                      <  2:854468/150‑1 (MQ=255)
                                                                                                                            ggCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGTGAACAGGCCCTg                                                                 <  1:455665/103‑1 (MQ=255)
                                                                                                                            ggCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGTGAACAGGCCCTg                                                                 >  2:455665/1‑103 (MQ=255)
                                                                                                                            ggCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCCGTTGGAAGTCACATTAGGTGACAATGGAAAAAGCTTAGATGGAGCGCAGCATGCCGTTGGTGTAGGAGATCATCTcgc                  >  1:871747/1‑150 (MQ=255)
                                                                                                                               tGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGTGAACAGGCCCTGGCCGTTGTGGTAGCGCAGCATGCCGTTg                                     >  1:381915/1‑128 (MQ=255)
                                                                                                                               tGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGTGAACAGGCCCTGGCCGTTGTGGTAGCGCAGCATGCCGTTg                                     <  2:381915/128‑1 (MQ=255)
                                                                                                                                      cggccCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGTGAACAGGCCCTGGCCGTTGTGGTAGCGCAGCATGCCGTTGGTGTAGGAGATCATCTCGCGGCCGCTGTc        <  1:174933/150‑1 (MQ=255)
                                                                                                                                            aaGGTAGCGGGCGTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGTGAACAGGCCCTGGCCGTTGTGGTAGCGCAGCATGCCGTTGGTGTAGGAGATCATCTCGCGGCCGCTGTCGTAGTc  >  1:219138‑M2/3‑150 (MQ=255)
                                                                                                                                              |                                                                                                                                                   
TCGTCAATGCGCTTGCGCAACTTGATCGGCGAAGGGCCGCCGAACTGGTAGCGCAGGTTGAGCGGGGTTTGCAGCAAGGATTGGTCGAGTACCACGGCCAAGGCACCGATCTGTTGGCCCAGCAGGCTGTCGGCCGGCCCAAGGTAGCGGGCCTGGTCGGCGATGAAGCCCTCACTGGCATAACGCCGGCAGCGCTGTTGGAAGTCACATTCGGTGAACAGGCCCTGGCCGTTGTGGTAGCGCAGCATGCCGTTGGTGTAGGAGATCATCTCGCGGCCGCTGTCGTAGTC  >  NC_002947/3253946‑3254235

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.