New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3810697 =	59 (1.310)	3 (0.070)	3/230	NT	5.8%	coding (771/882 nt)	PP_3366	LysR family transcriptional regulator
	?	NC_002947	3810732 =	43 (1.030)					coding (806/882 nt)	PP_3366	LysR family transcriptional regulator

AGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAGGGCCAGTCTTCTGGGCGAGATGAGCAATCACCTGCTCCGCGGCACGCCCCAGGCAGCCTTTGAAAA  >  NC_002947/3810585‑3810875                                                                                                                                                      |                                                                                                                                                agagCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCt                                                                                                                                               >  1:638966/1‑150 (MQ=255)   agCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCg                                                                                                                                             >  2:662480/1‑150 (MQ=255)    gCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCgg                                                                                                                                            <  1:818286/150‑1 (MQ=255)     cAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCggg                                                                                                                                           >  1:806085/1‑150 (MQ=255)        gattgctcatctcgcccagaagactggccctcaccgctccaggtaatgcgtctgtgcagcaaagtcgatgaaccgcttgctggccagcgacaggtaggcccccgagcGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCgggg                                                                                                                                          >  1:86266‑M1/108‑150 (MQ=255)             tctcGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATAcc                                                                                                                                   >  2:884313/1‑150 (MQ=255)                cGCTGGTGGTGCAGGCCGCGGTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGCTCCGGCCAGCACATCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGt                                                                                                                                <  2:83766/150‑1 (MQ=255)                cGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCACCGAAGGAC‑GCCAGTCATCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGt                                                                                                                                <  2:347222/150‑1 (MQ=255)                cGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGt                                                                                                                                <  2:230639/150‑1 (MQ=255)                 gCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCgggg                                                                                                                                          >  1:298795/1‑139 (MQ=255)                 gCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCgggg                                                                                                                                          <  2:298795/139‑1 (MQ=255)                     gtggtgCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCggg                                                                                                                                           >  2:604318/1‑134 (MQ=255)                     gtggtgCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCggg                                                                                                                                           <  1:604318/134‑1 (MQ=255)                        gtgCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCt                                                                                                                                  <  1:946965/140‑1 (MQ=255)                        gtgCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCt                                                                                                                                  >  2:946965/1‑140 (MQ=255)                        gtgCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGcc                                                                                                                        <  1:662480/150‑1 (MQ=255)                         tcctggCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCa                                                                                                                       >  2:596347/5‑150 (MQ=255)                            aGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCgg                                                                                                                                            >  1:1154956/1‑126 (MQ=255)                            aGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCgg                                                                                                                                            <  2:1154956/126‑1 (MQ=255)                              gCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAg                                                                                                                  >  2:283701/1‑150 (MQ=255)                                   gcTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCgggg                                                                                                                                          <  2:364394/121‑1 (MQ=255)                                   gcTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCgggg                                                                                                                                          >  1:364394/1‑121 (MQ=255)                                     tGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCa                                                                                                           <  1:596347/150‑1 (MQ=255)                                      ggACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTAGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCAt                                                                                                          >  2:248967/1‑150 (MQ=255)                                       gACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATAc                                                                                                                                    >  2:1034282/1‑123 (MQ=255)                                       gACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATAc                                                                                                                                    <  1:1034282/123‑1 (MQ=255)                                       gACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTg                                                                                                                           >  2:825616/1‑132 (MQ=255)                                       gACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTg                                                                                                                           <  1:825616/132‑1 (MQ=255)                                       gACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATc                                                                                                         <  2:355691/150‑1 (MQ=255)                                             aTGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACttt                                                                                                   >  1:92252/1‑150 (MQ=255)                                                ggggTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTtgct                                                                                                <  1:602591/150‑1 (MQ=255)                                                   gTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGGCAGCAAGCGGTTCATCGACTTTGCTGca                                                                                             >  1:731941/1‑150 (MQ=255)                                                    tGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGcac                                                                                            >  2:926125/1‑150 (MQ=255)                                                     ggCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCCCCCTTGCTGccca                                                                                           <  2:806085/150‑1 (MQ=255)                                                          cccTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGc                                                                                      >  1:517887/1‑150 (MQ=255)                                                           ccTGCTGCGCTAGGTCCAGGAACGGAAGCGCGCCA‑TCGAC‑GCGTTCGTGGTCCGGCCTGTTCATCAGATGAGTTTCCGCGTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCa                                                                                     >  2:318082/1‑150 (MQ=255)                                                                           cagcaACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGa                                                                     >  1:1033504/1‑150 (MQ=255)                                                                            agcaACGCACGCCAGGCA‑TCGTCGGCGGGC‑CGTTCCGGCCAGCACAGTAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAg                                                                    <  2:255614/150‑1 (MQ=255)                                                                               aaCGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAGGGc                                                                 <  1:283701/150‑1 (MQ=255)                                                                                       ccAGGCA‑TCGTCGGCGTGC‑CGTTCCGTCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAGGGCCAGtcttc                                                         <  2:282159/150‑1 (MQ=255)                                                                                                       gTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCCGCATAGGGACTTTGCTGCACAGACGCATTACCTGGAGCGGCGAGGGCCAATCGACTGGTCGTGTGGAGCa                                          >  1:74408/1‑150 (MQ=255)                                                                                                        tGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTtgct                                                                                                >  2:298143/1‑95 (MQ=255)                                                                                                        tGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTtgct                                                                                                <  1:298143/95‑1 (MQ=255)                                                                                                           ccccgagcgccagcacaagcggaaactcatctgctgtgctggcGCTCGGGGGCCTACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAGGGCCAGTCTTCTGGGCGAGATGAGCAATc                                       >  1:86266‑M2/44‑150 (MQ=255)                                                                                                                     cagcacaagcggaaactcatctgctgtgctggcGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAggg                                                                  <  1:1136317‑M2/80‑1 (MQ=255)                                                                                                                     cagcacaagcggaaactcatctgctgtgctggcGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAggg                                                                  >  2:1136317‑M2/34‑113 (MQ=255)                                                                                                                           AGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCACGACATGGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAGGGCCAGTCTTCTGGGCGAGATGAGCAATCACCTGCTCCGCGGCAc                       >  1:318082‑M1/1‑150 (MQ=255)                                                                                                                             cagATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAGGGCCAGTCTTCTGGGCGAGATGAGCAATCACCTGCTCCGCGGCACGc                     >  2:969735/1‑150 (MQ=255)                                                                                                                                aTGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAGGGCCAGTCTTCTGGGCGAGATGAGCAATCACCTGCTCCGCGGCACGcccc                  >  2:883786/1‑150 (MQ=255)                                                                                                                                   aGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAGGGCCAGTCTTCTGGGCGAGATGAGCAATCACCTGCTCCGCGGCACGCCCCAgg               <  2:638966/150‑1 (MQ=255)                                                                                                                                                gctggcGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAGGGCCAGTCTTCTGGGCGAGATGAGCAATCACCTGCTCCGCGGCACGCCCCAGGCAGCCTTTGaaaa  <  1:884313‑M2/144‑1 (MQ=255)                                                                                                                                                 ctggcGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAGGGCCAGTCTTCTGGGCGAGATGAGCAATCACCTGCTCCGCGGCAc                       <  2:720302‑M2/123‑1 (MQ=255)                                                                                                                                                 ctggcGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAGGGCCAGTCTTCTGGGCGAGATGAGCAATCACCTGCTCCGCGGCAc                       >  1:720302‑M2/6‑128 (MQ=255)                                                                                                                                                      |                                                                                                                                                AGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCA‑TCGTCGGCGTGC‑CGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAGGGCCAGTCTTCTGGGCGAGATGAGCAATCACCTGCTCCGCGGCACGCCCCAGGCAGCCTTTGAAAA  >  NC_002947/3810585‑3810875

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.