New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4794368	37 (0.820)	3 (0.070)	3/238	NT	7.2%	coding (656/984 nt)	PP_4222	protein SyrP
	?	NC_002947	= 4794392	42 (0.970)					coding (632/984 nt)	PP_4222	protein SyrP

GCGCGGCAAGTCTTCCTCGTCGACGATTTCCAGCAGGCTTTCGCGCACCTCGGCCGGTAGGTTGGAGACATGGAACAGGTGGGCCTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTCCACTACGCTGCGGTCCTCGGTGTTGAACACCTGCTCCCAACTCACATCAAGGCCATTGCCGTAGTTGCGCACATACA  >  NC_002947/4794253‑4794539                                                                                                                                            |                                                                                                                                                    atctggCAAGTCTTCCTCGTCGACGATTTCCAGCAGGCTTTCGCGGCCCTCGGCCGGTAGGTTGGAGACATGGAACAGGTGGGCCTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGt                                                                                                                                           <  1:734133/146‑1 (MQ=255)        aaGTCTTCCTCGTCGACGATTTCCAGCAGGCTTTCGCGCACCTCGGCCGGTAGGTTGGAGACATGGAACAGGTGGGCCTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGc                                                                                                                                    <  2:1067583/150‑1 (MQ=255)           tCTTCCTCGTCGACGATTTCCAGCAGGCTTTCGCGCACCTCGGCCGGTAGGTTGGAGACATGGAACAGGTGGGCCTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGGAGCTCa                                                                                                                                 <  1:106959/150‑1 (MQ=255)           tCTTCCTCGTCGACGATTTCCAGCAGGCTTTCGCGCACCTCGGCCGGTAGGTTGGAGACATGGAACAGGTGGGCCTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCa                                                                                                                                 <  1:1170653/150‑1 (MQ=255)                cTCGTCGACGATTTCCAGCAGGCTTTCGCGCACCTCGGCCGGTAGGTTGGAGACATGGAACAGGTGGGCCTGATTGAACCATACCTGATCACCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACcgtc                                                                                                                            <  2:795186/150‑1 (MQ=255)                      gacgaTTTCCAGCAGGCTTTCGCGCACCTCGGCCGGTAGGTTGGAGACATGGAACAGGTGGGCCTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCtt                                                                                                                      <  1:95327/150‑1 (MQ=255)                       acgaTTTCCAGCAGGCTTTCGCGCACCTCGGCCGGTAGGTTGGAGACATGGAACAGGTGGGCCTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTgcg                                                                                                                                        <  2:642399/131‑1 (MQ=255)                       acgaTTTCCAGCAGGCTTTCGCGCACCTCGGCCGGTAGGTTGGAGACATGGAACAGGTGGGCCTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTgcg                                                                                                                                        >  1:642399/1‑131 (MQ=255)                         gaTTTCCAGCAGGCTTTCGCGCACCTCGGCCGGTAGGTTGGAGACATGGAACAGGTGGGCCTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCtt                                                                                                                      >  2:184396/1‑147 (MQ=255)                         gaTTTCCAGCAGGCTTTCGCGCACCTCGGCCGGTAGGTTGGAGACATGGAACAGGTGGGCCTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCtt                                                                                                                      <  1:184396/147‑1 (MQ=255)                             tCCAGCAGGCTTTCGCGCACCTCGGCCGGTAGGTTGGAGACATGGAACAGGTGGGCCTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTcc                                                                                                               >  1:920691/1‑150 (MQ=255)                                                       cGGTAGGTTGGAGACATGGAACAGGTGGGCCTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCt                                                                                                                       <  1:1139406/116‑1 (MQ=255)                                                       cGGTAGGTTGGAGACATGGAACAGGTGGGCCTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCt                                                                                                                       >  2:1139406/1‑116 (MQ=255)                                                            ggTTGGAGACATGGAACAGGTGGGCCTGATTGAACCATACCTGATCTCAATTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGCCt                                                                                >  1:822348/1‑150 (MQ=255)                                                                 gagaCATGGAACAGGTGGGCCTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTCCACt                                                                           >  2:842177/1‑150 (MQ=255)                                                                      aTGGAACAGGTGGGCCTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGcc                                                                                 >  2:828005/1‑139 (MQ=255)                                                                      aTGGAACAGGTGGGCCTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGcc                                                                                 <  1:828005/139‑1 (MQ=255)                                                                      aTGGAACAGGTGGGCCTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTCCACTACGCt                                                                      <  1:112139/150‑1 (MQ=255)                                                                      aTGGAACAGGTGGGCCTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTCCACTACGCt                                                                      >  2:622648/1‑150 (MQ=255)                                                                         gAACAGGTGGGCCTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTCCACTACGCTGCg                                                                   >  2:941145/1‑150 (MQ=255)                                                                          aaCAGGTGGGCCTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTCCACTACGCTGCgg                                                                  <  2:614963/150‑1 (MQ=255)                                                                               gTGGGCCTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTCCACTACGCTGCGGTCCTc                                                             >  1:234105/1‑150 (MQ=255)                                                                                tGGGCCTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTCCACTACGCTGCGGTCCTCg                                                            <  1:941145/150‑1 (MQ=255)                                                                                   gCCTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTCCACTACGCTGCGGTCCTCGgtg                                                         <  1:1163071/150‑1 (MQ=255)                                                                                     cTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGAtg                                                                                                      >  1:779999/1‑103 (MQ=255)                                                                                     cTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGAtg                                                                                                      <  2:779999/103‑1 (MQ=255)                                                                                              ccATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTCCACTACGCTGCGGTCCTCGGTGTTGAACACCTg                                              >  2:39390/1‑150 (MQ=255)                                                                                                 tACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTCCACTACGCTGCGGTCCTCGGTGTTGAACACCTGCTc                                           <  1:39390/150‑1 (MQ=255)                                                                                                  aCCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTCCACTACGCTGCGGTCCTCGGTGATAAACACCTGCTcc                                          >  2:689128/1‑150 (MQ=255)                                                                                                    cTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTc                                                                               >  2:1101264/1‑111 (MQ=255)                                                                                                    cTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTc                                                                               <  1:1101264/111‑1 (MQ=255)                                                                                                    cTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTCCACTACGCTGCGGTCCTCGGTGTTGAACACCTGCTCCCa                                        >  1:944904/1‑150 (MQ=255)                                                                                                          ccccGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTTCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTCCACTACGCTGCGGTCCTCGGTGTTGAACACCTGCTCCCAACTcac                                  >  1:373691/1‑150 (MQ=255)                                                                                                          ccccGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTCCACTACGCTGCGGTCCTCGGTGTTGAACACCTGCTCCCAACTcac                                  >  1:595454/1‑150 (MQ=255)                                                                                                           cccGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTCCACTACGCTGCGGTCCTCGGTGTTGAACACCTGCTCCCAACTcaca                                 >  2:986226/1‑150 (MQ=255)                                                                                                              gTCCAGGGGTGCGTGGCCACGGCCTGGCAGAcctggacgggggatcaggtatggttcaatcaggcccacctgttccatgtctccaacctaccggccgaggtgcgcgaaagcctgctggaaatcgtcgacgaggaagacttgccgcgcaac                              <  2:1129080‑M2/150‑120 (MQ=255)                                                                                                                 cAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTTCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTCCACTACGCTGCGGTCCTCGGTGTTGAACACCTGCTCCCAACTCACATCAAgg                           <  2:373691/150‑1 (MQ=255)                                                                                                                    gggTGCGTGGCCACGGCCTGGCAGAcctggacgggggatcaggtatggttcaatcaggcccacctgttccatgtctccaacctaccggccgaggtgcgcgaaagcctgctggaaatcgtc                                                      <  2:248876‑M2/120‑96 (MQ=255)                                                                                                                    gggTGCGTGGCCACGGCCTGGCAGAcctggacgggggatcaggtatggttcaatcaggcccacctgttccatgtctccaacctaccggccgaggtgcgcgaaagcctgctggaaatcgtc                                                      >  1:248876‑M2/1‑25 (MQ=255)                                                                                                                          gTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTCCACTACGCTGCGGTCCTCGGTGTTGAACACCTGCTCCCAACTCACATCAAGGCCATTGCCg                  <  1:622648/150‑1 (MQ=255)                                                                                                                           tGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTCCACTACGCTGCGGTCCTCGGTGTTGAACACCTGCTCCCAACTCACATCAAGGCCATTGCCGt                 <  2:595454/150‑1 (MQ=255)                                                                                                                                ccGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCTTCCTCCCCTCCCCAGTCGATGTGGTGCGCGCGCCAATAGCCCCCCACTACGCTGCGGTCCTCGGTGTTGAACACCGCCTCCCAACCCACATCAAGGCCTTT‑CCGTAGTTgc           <  2:944904/149‑1 (MQ=255)                                                                                                                                   gCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTCCACTACTCTGCGGTCCTCGGTGTTGAACACCTGCTCCCaa                                       <  1:332016/120‑1 (MQ=255)                                                                                                                                   gCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTCCACTACGCTGCGGTCCTCGGTGTTGAACACCTGCTCCCaa                                       >  2:332016/1‑120 (MQ=255)                                                                                                                                    ccTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCgg                                                                                          <  1:790007/68‑1 (MQ=255)                                                                                                                                    ccTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCgg                                                                                          >  2:790007/1‑68 (MQ=255)                                                                                                                                          aGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTCCACTACGCTGCGGTCCTCGGTGTTGAACACCTGCTCCCAACTCACATCAAGGCCATTGCCGTAGTTGCGCacataca  >  1:511743/1‑150 (MQ=255)                                                                                                                                            |                                                                                                                                                    GCGCGGCAAGTCTTCCTCGTCGACGATTTCCAGCAGGCTTTCGCGCACCTCGGCCGGTAGGTTGGAGACATGGAACAGGTGGGCCTGATTGAACCATACCTGATCCCCCGTCCAGGGGTGCGTGGCCACGGCCTGGCAGACCTGGCGCGTGCGCAGCTCACCGTCGTCCTTCCATTCCCAGTCGATGTGGTGCGCGCGGCAATAGGCCTCCACTACGCTGCGGTCCTCGGTGTTGAACACCTGCTCCCAACTCACATCAAGGCCATTGCCGTAGTTGCGCACATACA  >  NC_002947/4794253‑4794539

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.