New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5145922 =	50 (1.110)	5 (0.120)	3/238	NT	10.2%	coding (880/1323 nt)	srmB	ATP‑dependent DEAD‑box RNA helicase
	?	NC_002947	5145955 =	40 (0.920)					coding (847/1323 nt)	srmB	ATP‑dependent DEAD‑box RNA helicase

CACACGGTGTACGTACTCGTCACCGCTACGTGGCATGTCGAAGTTGATCACCAGGTCCAGGCCGTCGATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGCCACCAGGTGACCGTAGATGCGGTCGGCCATGGCGCGGGTGTTGGTGAAGATGATCGCCTTGTCGAAGGTTTCGTTGGCCAGCAA  >  NC_002947/5145809‑5146093                                                                                                                                                   |                                                                                                                                           ggcgatcatcttcaccaacacccgcgccatggccgaccgcatctacggtcacctggtggccaaggacgtgaaggctttcgtgctgcatggcgaaaaggaccagcaggaccgcaAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCg                                                                                                                                         >  2:835128‑M1/114‑150 (MQ=255)  acacGGTGTACGTACTCGTCACCGCTACGTGGCATGTCGAAGTTGATCACCAGGTCCAGGCCGTCGATATCCAGGCCACCGTTGGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCgg                                                                                                                                        >  1:677845/1‑150 (MQ=255)             gtacTCGTCACCGCTACGTGGCATGTCGAAGTTGATCACCAGGTCCAGGCCGTCGATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCg                                                                                                                                         <  1:1175484/138‑1 (MQ=255)             gtacTCGTCACCGCTACGTGGCATGTCGAAGTTGATCACCAGGTCCAGGCCGTCGATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCg                                                                                                                                         >  2:1175484/1‑138 (MQ=255)             gtacTCGTCACCGCTACGTGGCATGTCGAAGTTGATCACCAGGTCCAGGCCGTCGATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTc                                                                                                                             <  1:918530/150‑1 (MQ=255)              tacTCGTCACCGCTACGTGGCATGTCGAAGTTGATCACCAGGTCCAGGCCGTCGATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCg                                                                                                                                         <  2:993139/137‑1 (MQ=255)              tacTCGTCACCGCTACGTGGCATGTCGAAGTTGATCACCAGGTCCAGGCCGTCGATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCg                                                                                                                                         >  1:993139/1‑137 (MQ=255)               acTCGTCACCGCTACGTGGCATGTCGAAGTTGATCACCAGGTCCAGGCCGTCGATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCt                                                                                                                           <  1:931256/150‑1 (MQ=255)                        cGCTACGTGGCATGTCGAAGTTGATCACCAGGTCCAGGCCGTCGATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCAt                                                                                                                  <  1:1110049/150‑1 (MQ=255)                                 gCATGTCGAAGTTGATCACCAGGTCCAGGCCGTCGATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGACATgca                                                                                                               <  2:873828/144‑1 (MQ=255)                                 gCATGTCGAAGTTGATCACCAGGTCCAGGCCGTCGATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGACATgca                                                                                                               >  1:873828/1‑144 (MQ=255)                                         aaGTTGATCACCAGGTCCAGGCCGTCGATATCCAGCCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCAAGTCTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTc                                                                                                 <  2:644762/150‑1 (MQ=255)                                           gTTGATCACCAGGTCCAGGCCGTCGATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCAc                                                                                               >  2:707600/1‑150 (MQ=255)                                              gATCACCAGGTCCAGGCCGTCGATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGaaa                                                                                                       >  2:922904/1‑139 (MQ=255)                                              gATCACCAGGTCCAGGCCGTCGATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGaaa                                                                                                       <  1:922904/139‑1 (MQ=255)                                                   ccAGGTCCAGGCCGTCGATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTgg                                                                                       <  2:476208/150‑1 (MQ=255)                                                    cAGGTCCAGGCCGTCGATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTc                                                                                                                                  <  2:263297/106‑1 (MQ=255)                                                    cAGGTCCAGGCCGTCGATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTc                                                                                                                                  >  1:263297/1‑106 (MQ=255)                                                    cAGGTCCAGGCCGTCGATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCtt                                                                                         <  1:433859/147‑1 (MQ=255)                                                    cAGGTCCAGGCCGTCGATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCtt                                                                                         >  2:433859/1‑147 (MQ=255)                                                      ggTCCAGGCCGTCGATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGcca                                                                                    >  2:1088825/1‑150 (MQ=255)                                                        tCCAGGCCGTCGATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGccacc                                                                                  >  2:64312/1‑150 (MQ=255)                                                          cAGGCCGTCGATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGCCACCAg                                                                                >  1:16547/1‑150 (MQ=255)                                                                gTCGATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACTTCCTTGGCCACCAGGTGAcc                                                                          <  1:844427/150‑1 (MQ=255)                                                                 tCGATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGCCACCAGGTGACCg                                                                         >  1:186791/1‑150 (MQ=255)                                                                   gATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGCCACCAGGTGACCGTa                                                                       >  1:645841/1‑150 (MQ=255)                                                                    atatCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGc                                                                                                                                          >  1:470521/1‑82 (MQ=255)                                                                    atatCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGc                                                                                                                                          <  2:470521/82‑1 (MQ=255)                                                                     tatCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCt                                                                                          <  2:487477/129‑1 (MQ=255)                                                                     tatCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCt                                                                                          >  1:487477/1‑129 (MQ=255)                                                                      gaaggctttcgtgctgcatggcgaaaaggaccagaaggaccgcaAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGc                                                                                                                                          <  1:33449‑M1/36‑1 (MQ=255)                                                                      gaaggctttcgtgctgcatggcgaaaaggaccagaaggaccgcaAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGc                                                                                                                                          >  2:33449‑M1/45‑80 (MQ=255)                                                                      gaaggctttcgtgctgcatggcgaaaaggaccagaaggaccgcaAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGc                                                                                                                                          >  2:33331‑M1/45‑80 (MQ=255)                                                                      gaaggctttcgtgctgcatggcgaaaaggaccagaaggaccgcaAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGc                                                                                                                                          <  1:33331‑M1/36‑1 (MQ=255)                                                                          aGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGCCACCAGGTGACCGTAGATGCgg                                                                <  1:64312/150‑1 (MQ=255)                                                                                 gggCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGCCACCAGGTGACCGTAGATGCGGTCGGCCa                                                         <  2:842970/150‑1 (MQ=255)                                                                                          cGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGTAGCACGAAAGCCTTCACGTCCTTGGCCACCAGGTGACCGTAGATGCGGTCGGCCATGGCGCggg                                                <  2:677845/150‑1 (MQ=255)                                                                                             cggtcgCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGCCACCAGGTGACCGTAGATGCGGTCGGCCATGGCGCGGgtgt                                             >  1:674190/1‑150 (MQ=255)                                                                                               gtcgCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGCCACCAGGTGACCGTAGATGCGGTCGGCCATGGCGCGGGTGTTg                                           <  2:674190/150‑1 (MQ=255)                                                                                                  gCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCACGAGGCAGGATATCCCACATGGGCTGGGCTACCAGGTGTCCGTCGATTCTTTTCGCTATTGCGCGGGTGTTGGTg                                        >  1:928684/1‑150 (MQ=255)                                                                                                   ccaccaGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTTCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGCCACCAGGTGACCGTAGATGCGGTCGGCCATGGCGCGGGTGTTGGTGa                                       >  1:1015912/1‑150 (MQ=255)                                                                                                   ccaccaGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGCCACCAGGTGACCGTAGATGCGGTCGGCCATGGCGCGGGTGTTGGt                                         >  1:507014/1‑148 (MQ=255)                                                                                                   ccaccaGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGCCACCAGGTGACCGTAGATGCGGTCGGCCATGGCGCGGGTGTTGGt                                         <  2:507014/148‑1 (MQ=255)                                                                                                     accaGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGCCACCAGGTGACCGTAGATGCGGTCGGCCATGGCGCGGGTGTTGGTGAAg                                     >  1:212491/1‑150 (MQ=255)                                                                                                      ccaGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGCCACCAGGTGACCGTAGATGCGGTCGGCCATGGCGCGGGTGTTGGTGAAga                                    <  2:16547/150‑1 (MQ=255)                                                                                                       caGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGCCACCAGGTGACCGTAGATGCGGTCGGCCATGGCGCGGGTGTTGGTGAAgat                                   >  1:139982/1‑150 (MQ=255)                                                                                                              ttGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGCCACCAGGTGACCGTAGATGCGGTCGGCCATGGCGCGGGTGTTGGTGAAGATGATCGcc                            <  2:1016986/150‑1 (MQ=255)                                                                                                              cgcaagctggccatcgagcgcttcaagcagggcagctTGCGGTCCTGCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGCCACCAGGTGACCGTAGATGCGGTCGGCCATGGCGCGGGTGTTGGTGAAGATGATCGcc                            >  2:835128‑M2/38‑150 (MQ=255)                                                                                                               gcaagctggccatcgagcgcttcaagcagggcagctTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTc                                                                                                 >  2:33449‑M2/37‑80 (MQ=255)                                                                                                               gcaagctggccatcgagcgcttcaagcagggcagctTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTc                                                                                                 <  1:33449‑M2/44‑1 (MQ=255)                                                                                                               gcaagctggccatcgagcgcttcaagcagggcagctTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTc                                                                                                 <  1:33331‑M2/44‑1 (MQ=255)                                                                                                               gcaagctggccatcgagcgcttcaagcagggcagctTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTc                                                                                                 >  2:33331‑M2/37‑80 (MQ=255)                                                                                                                      GCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGCCACCAGGTGACCGTAGATGCGGTCGGCCATGGCGCGGGTGTTGGTGAAGATGATCGCCTTGTCGaa                    >  2:75069‑M1/1‑150 (MQ=255)                                                                                                                                 aGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGCCACCAGGTGACCGTAGATGCGGTCGGCCATGGCGCGGGTGTTGGTGAAGATGATCGCCTTGTCGAAGGTTTCGTTgg         >  2:878774/1‑150 (MQ=255)                                                                                                                                  gcgcTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTCTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGCCACCAGGTGACCGTAGATGCGGTCGGCCATGGCGCGGGTGTTGGTGAAGATGATCGCCTTGTCGAAGGTTTCGTTGGc        <  2:645841/150‑1 (MQ=255)                                                                                                                                     cTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGCCACCAGGTGACCGTAGATGCGGTCGGCCATGGCGCGGGTGTTGGTGAAgatgat                                >  1:859131/1‑123 (MQ=255)                                                                                                                                     cTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGCCACCAGGTGACCGTAGATGCGGTCGGCCATGGCGCGGGTGTTGGTGAAgatgat                                <  2:859131/123‑1 (MQ=255)                                                                                                                                        gATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGCCACCAGGTGACCGTAGATGCGGTCGGCCATGGCGCGGGTGTTGGTGAAGATGATCGCCTTGTCGAAGGTTTCGTTGGCCAGCaa  >  1:952770/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                           CACACGGTGTACGTACTCGTCACCGCTACGTGGCATGTCGAAGTTGATCACCAGGTCCAGGCCGTCGATATCCAGGCCACGGGCTGCCACGTCGGTCGCCACCAGCACTTTGGAGCTGCCCTGCTTGAAGCGCTCGATGGCCAGCTTGCGGTCCTTCTGGTCCTTTTCGCCATGCAGCACGAAAGCCTTCACGTCCTTGGCCACCAGGTGACCGTAGATGCGGTCGGCCATGGCGCGGGTGTTGGTGAAGATGATCGCCTTGTCGAAGGTTTCGTTGGCCAGCAA  >  NC_002947/5145809‑5146093

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.